Deans, A. R., Lewis, S. E., Huala, E., Anzaldo, S. S., Ashburner, M., Balhoff, J. P., … Mabee, P. (2015). Finding Our Way through Phenotypes. PLoS Biol, 13, e1002033. https://doi.org/10.1371/journal.pbio.1002033 (Original work published)

Arighi, C. N., Carterette, B., Cohen, B., Krallinger, M., Wilbur, J., Fey, P., … Wu, C. (2013). An overview of the BioCreative 2012 Workshop Track III: interactive text mining task. Database, 2013. Retrieved from http://database.oxfordjournals.org/content/2013/bas056.abstract (Original work published 2013)

Lingutla, N. T., Todorovic, S., & Jaiswal, P. (2013). Annotation of image segments with ontologies (AISO) (Oregon State University). Oregon State University, Corvallis. Retrieved from http://hdl.handle.net/1957/42883

Cooper, L., Walls, R. L., Elser, J., Gandolfo, M. A., Stevenson, D. W., Smith, B., … Jaiswal, P. (2013). The Plant Ontology as a Tool for Comparative Plant Anatomy and Genomic Analyses. Plant & Cell Physiology, 54(2), 1-23. https://doi.org/10.1093/pcp/pcs163 (Original work published 2013)

Van Auken, K., Fey, P., Berardini, T. Z., Dodson, R., Cooper, L., Li, D., … Sternberg, P. W. (2012). Text mining in the biocuration workflow: applications for literature curation at WormBase, dictyBase and TAIR. Database, 2012. Retrieved from http://database.oxfordjournals.org/content/2012/bas040.abstract (Original work published 2012)

Walls, R. L., Cornet, R., Steven, R., Cooper, L. D., Macklin, J. A., Cui, H., … Jaiswal, P. (2012). Mapping of glossary terms from the Flora of North America to the Plant Ontology enhances both resources. 3rd International Conference on Biomedical Ontology (ICBO 2012). Presented at the. Graz, Austria: KR-MED Series. Retrieved from http://ceur-ws.org/Vol-897/ (Original work published 2012)

Walls, R. L., Athreya, B., Cooper, L., Elser, J., Gandolfo, M. A., Jaiswal, P., … Stevenson, D. W. (2012). Ontologies as Integrative Tools for Plant Science. American Journal of Botany, 99(8), 1263-75. https://doi.org/10.3732/ajb.1200222 (Original work published 2012)

Lens, F., Cooper, L., Gandolfo, M. A., Groover, P., Jaiswal, P., Lachenbruch, R., … Wegrzyn, J. (2012). An extension of the Plant Ontology project supporting wood anatomy and development research. IAWA Journal, 33, 113-117. Retrieved from http://www.researchgate.net/publication/232271560_An_extension_of_the_Plant_Ontology_project_supporting_wood_anatomy_and_development_research

Walls, R., Smith, B., Elser, J., & Goldfain, A. (2012). A plant disease extension of the Infectious Disease Ontology. International Conference on Biomedical Ontology (ICBO-2012), 897. Graz, Austria: CEUR Workshop Proceedings. Retrieved from http://ceur-ws.org/Vol-897/

Arnaud, E., Cooper, L., Shrestha, R., Menda, N., Nelson, R. T., Matteis, L., … McLaren, G. (2012). Towards a Reference Plant Trait Ontology for Modeling Knowledge of Plant Traits and Phenotype. International Conference on Knowledge Discovery and Information Retrieval (IC3K2012). Presented at the. Barcelona, Spain. (Original work published 2012)

Shulaev, V., Sargent, D. J., Crowhurst, R. N., Mockler, T. C., Folkerts, O., Delcher, A. L., … Folta, K. M. (2011). The genome of woodland strawberry (<i>Fragaria vesca</i>). Nat Genet, 43, 109-116. Retrieved from http://dx.doi.org/10.1038/ng.740 (Original work published 2011)

Preece, J., Elser, J., & Jaiswal, P. (2011). Planteome Annotation Wiki: A Semantic Application for the Community Curation of Plant Genotypes and Phenotypes. SWAT4LS 2011, 96-97. London, UK: ACM New York, NY. https://doi.org/10.1145/2166896.2166921

Preece, J., Elser, J. L., & Jaiswal, P. (2011). Planteome Annotation Wiki: A Semantic Web Application for the Community Curation of Plant Genotypes and Phenotype. 4th International Workshop on Semantic Web Applications and Tools for Life Sciences. Presented at the. Univ. of London and the Wellcome Trust Collection Conference Center (London, UK). Retrieved from http://dl.acm.org/citation.cfm?doid=2166896.2166921

Preece, J., Elser, J., & Jaiswal, P. (2010). A Semantic Wiki for Genotype/Phenotype Annotation in Plant Species. NETTAB 2010 Conference on Biological Wikis, 109-112. Naples, Italy: Aracne. Retrieved from http://www.nettab.org/2010/ (Original work published 2010)

Avraham, S., Tung, C.-W., Ilic, K., Jaiswal, P., Kellogg, E. A., McCouch, S., … Ware, D. (2008). The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations. Nucleic Acids Research, 36, D449-54. https://doi.org/10.1093/nar/gkm908 (Original work published 2008)

Ilic, K., Rhee, S. Y., Kellogg, E. A., Stevens, P. F., Burger, A., Davidson, D., & Baldock, R. (2008). Plant Structure Ontology (PSO) - A Morphological and Anatomical Ontology of Flowering Plants. In Anatomy Ontologies for Bioinformatics (Vol. 6, pp. 27-42). London: Springer. https://doi.org/10.1007/978-1-84628-885-2_2

Ilic, K., Kellogg, E. A., Jaiswal, P., Zapata, F., Stevens, P. F., Vincent, L. P., … Rhee, S. Y. (2007). The Plant Structure Ontology, a Unified Vocabulary of Anatomy and Morphology of a Flowering Plant. Plant Physiology, 143(2), 587-99. https://doi.org/10.1104/pp.106.092825 (Original work published 2007)

Pujar, A., Jaiswal, P., Kellogg, E. A., Ilic, K., Vincent, L., Avraham, S., … McCouch, S. (2006). Whole-plant growth stage ontology for angiosperms and its application in plant biology. Plant Physiology, 142(2), 414-28. https://doi.org/10.1104/pp.106.085720 (Original work published 2006)

Jaiswal, P., Avraham, S., Ilic, K., Kellogg, E. A., McCouch, S., Pujar, A., … Zapata, F. (2005). Plant Ontology (PO): a Controlled Vocabulary of Plant Structures and Growth Stages. Comparative and Functional Genomics, 6(7-8), 388-97. https://doi.org/10.1002/cfg.496 (Original work published 2005)

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