Plant Ontology Release #14 January 2011
Plant Ontology Database
Summary of changes to the ontologies
Ontology updates
Number of terms:
Total terms (not including obsoletes) 1282 Total children terms in Plant Structure (not including obsoletes) 1042 Total children terms in Plant Growth and Development Stages (not including obsoletes) 238 Associations / Annotations
Number of associations/annotations:
Total number of associations 584708 Number of associations NEW 0 Total number of unique objects (genes, germplasms, QTLs) 46428 Number of unique objects NEW 0
Number of associations by source database:
Database Associations Total# TAIR Arabidopsis (mouse-ear cress) 525407 NASC Arabidopsis (mouse-ear cress) 1897 Gramene Oryza sativa (rice) 29872 MaizeGDB Zea mays (maize) 7601 SGN (individual species listed below) 19467 -Anisodus acutangulus 2 -Atropa baetica 4 -Capsicum annuum (pepper) 54 -Coffea arabica (coffee) 8 -Datura strumonium (jimson weed) 3 -Hyoscyamus niger (black henbane) 2 -Lycopersicon esculentum (tomato) 18414 -Nicotiana tabacum (tobacco) 38 -Petunia hybrida (hybrid petunia) 56 -Physalis spp 4 -Solanum insanum/Solanum melongena (eggplant) 868 -Solanum tuberosum (potato) 14 Total number of individual object types by source database:
Database Object Type Object Types Total# TAIR (Arabidopsis) gene 24381 NASC (Arabidopsis) germplasm 1897 Gramene (rice) gene 1715 Gramene (rice) QTL 8558 MaizeGDB (maize) gene 1006 MaizeGDB (maize) germplasm 3928 SGN gene 174 SGN germplasm 4421 Total number of associations by evidence code:
Evidence Code Associations Total# IC 18101 IDA 19578 IEA 1 IEP 509300 IMP 32483 ISS 21 NAS 30 TAS 5349 Total number of object types by evidence code:
Object Type Evidence Code Object Type Total# protein IDA 16434 protein IEP 506482 protein IPI 4 protein NAS 29 protein TAS 87 IDA 466 IEP 2219 IMP 4 miRNA IDA 17 miRNA IEP 129 RNA IEP 40 gene_product IEP 1 gene_product NAS 1 snoRNA IEP 1 germplasm IMP 23748 germplasm IDA 2585 gene IC 571 gene IDA 76 gene IEA 1 gene IEP 428 gene IMP 2427 gene ISS 21 gene TAS 5262 QTL IC 17530 QTL IMP 6304