Plant Ontology Release #1010 October 2010
Plant Ontology Database
Summary of changes to the ontologies
Ontology updates
Number of terms:
Total terms (not including obsoletes) 1129 Total children terms in Plant Structure (not including obsoletes) 889 Total children terms in Plant Growth and Development Stages (not including obsoletes) 238 Associations / Annotations
Number of associations/annotations:
Total number of associations 588995 Number of associations NEW 31303 Total number of unique objects (genes, germplasms, QTLs) 46463 Number of unique objects NEW 1448
Number of associations by source database:
Database Associations Total# TAIR Arabidopsis (mouse-ear cress) 529688 NASC Arabidopsis (mouse-ear cress) 1897 Gramene Oryza sativa (rice) 29878 MaizeGDB Zea mays (maize) 7601 SGN (individual species listed below) 19467 -Anisodus acutangulus 2 -Atropa baetica 4 -Capsicum annuum (pepper) 54 -Coffea arabica (coffee) 8 -Datura strumonium (jimson weed) 3 -Hyoscyamus niger (black henbane) 2 -Lycopersicon esculentum (tomato) 18414 -Nicotiana tabacum (tobacco) 38 -Petunia hybrida (hybrid petunia) 56 -Physalis spp 4 -Solanum insanum/Solanum melongena (eggplant) 868 -Solanum tuberosum (potato) 14 Total number of individual object types by source database:
Database Object Type Object Types Total# TAIR (Arabidopsis) gene 24682 NASC (Arabidopsis) germplasm 1897 Gramene (rice) gene 1715 Gramene (rice) QTL 8558 MaizeGDB (maize) gene 1006 MaizeGDB (maize) germplasm 3928 SGN gene 174 SGN germplasm 4421 Total number of associations by evidence code:
Evidence Code Associations Total# IC 18101 IDA 19496 IEA 1 IEP 514063 IMP 32483 ISS 21 NAS 31 TAS 5351 Total number of object types by evidence code:
Object Type Evidence Code Object Type Total# gene IC 571 gene IDA 16451 gene IEA 1 gene IEP 514063 gene IMP 2427 gene ISS 21 gene NAS 31 gene TAS 5351 QTL IC 17530 QTL IMP 6304 germplasm IMP 23748 germplasm IDA 2585