Plant Ontology Release #16a January 2012
Plant Ontology Database
January 2012 Interim Release Page
Ontology updates
Number of terms:
Total terms (not including obsoletes) 1320 Total children terms in Plant Anatomy (not including obsoletes) 1080 Total children terms in Plant Growth and Development Stages (not including obsoletes) 238 Associations / Annotations
Number of associations/annotations:
Total number of associations 2170006 Number of associations NEW 81944 Total number of unique objects (genes, germplasms, QTLs) 107228 Number of unique objects NEW 25604
Number of associations by source database:
Database Associations Total# TAIR Arabidopsis (mouse-ear cress) 531704 NASC Arabidopsis (mouse-ear cress) 1897 Gramene Oryza sativa (rice) 29872 Gramene Phsycomitrella 10 MaizeGDB Zea mays (maize) 1495156 Jaiswal Lab Fragaria vesca (strawberry) 9561 Cosmoss Physcomitrella 81875 SGN (individual species listed below) 19931 -Anisodus acutangulus 2 -Atropa baetica 4 -Capsicum annuum (pepper) 54 -Coffea arabica (coffee) 8 -Datura strumonium (jimson weed) 3 -Hyoscyamus niger (black henbane) 2 -Lycopersicon esculentum (tomato) 18878 -Nicotiana tabacum (tobacco) 38 -Petunia hybrida (hybrid petunia) 56 -Physalis spp 4 -Solanum insanum/Solanum melongena (eggplant) 868 -Solanum tuberosum (potato) 14 Total number of individual object types by source database:
Database Object Type Object Types Total# TAIR (Arabidopsis) protein 24501 TAIR (Arabidopsis) miRNA 41 TAIR (Arabidopsis) RNA 2 TAIR (Arabidopsis) gene_product 2 TAIR (Arabidopsis) snoRNA 1 NASC (Arabidopsis) germplasm 1897 Jaiswal Lab (Fragaria) mRNA 3904 Gramene (rice) gene 1715 Gramene (rice) QTL 8558 Gramene (Physcomitrella Patens) gene 5 Cosmoss (Physcomitrella Patens) mRNA 25593 MaizeGDB (maize) gene 780 MaizeGDB (maize) gene_model 35323 SGN gene 174 SGN germplasm 4503 Total number of associations by evidence code:
Evidence Code Associations Total# IC 18101 IDA 20491 IEA 1 IEP 2094097 IGI 1 IMP 32076 ISS 21 NAS 30 TAS 5350 Total number of object types by evidence code:
Object Type Evidence Code Object Type Total# protein IDA 17339 protein IEP 511840 protein NAS 29 protein TAS 88 IDA 9 IEP 2248 miRNA IDA 22 miRNA IEP 129 RNA IEP 41 gene_product IEP 1 gene_product NAS 1 snoRNA IEP 1 germplasm IDA 3045 germplasm IMP 18395 gene IC 571 gene IDA 76 gene IEA 1 gene IEP 438 gene IGI 1 gene IMP 7377 gene ISS 21 gene TAS 5262 QTL IC 17530 QTL IMP 6304 mRNA IEP 91436 gene_model IEP 1487963