Release Notes Archive

Plant Ontology Release #16 October 2011

Plant Ontology Database

October 2011 Release Page

Ontology updates

Number of terms:

Total terms (not including obsoletes)	1320
Total children terms in Plant Anatomy (not including obsoletes)	1080
Total children terms in Plant Growth and Development Stages (not including obsoletes)	238

Associations / Annotations

Number of associations/annotations:

Total number of associations	2088062
Number of associations NEW	1497361
Total number of unique objects (genes, germplasms, QTLs)	81624
Number of unique objects NEW	35079

Number of associations by source database:

Database	Associations Total#
TAIR Arabidopsis (mouse-ear cress)	531635
NASC Arabidopsis (mouse-ear cress)	1897
Gramene Oryza sativa (rice)	29872
Gramene Phsycomitrella	10
MaizeGDB Zea mays (maize)	1495156
Jaiswal Lab Fragaria vesda (strawberry)	9561
SGN (individual species listed below)	19931
-Anisodus acutangulus	2
-Atropa baetica	4
-Capsicum annuum (pepper)	54
-Coffea arabica (coffee)	8
-Datura strumonium (jimson weed)	3
-Hyoscyamus niger (black henbane)	2
-Lycopersicon esculentum (tomato)	18878
-Nicotiana tabacum (tobacco)	38
-Petunia hybrida (hybrid petunia)	56
-Physalis spp	4
-Solanum insanum/Solanum melongena (eggplant)	868
-Solanum tuberosum (potato)	14

Total number of individual object types by source database:

Database	Object Type	Object Types Total#
TAIR (Arabidopsis)	protein	24490
TAIR (Arabidopsis)	miRNA	41
TAIR (Arabidopsis)	RNA	2
TAIR (Arabidopsis)	gene_product	2
TAIR (Arabidopsis)	snoRNA	1
NASC (Arabidopsis)	germplasm	1897
Jaiswal Lab (Fragaria)	mRNA	3904
Gramene (rice)	gene	1715
Gramene (rice)	QTL	8558
Gramene (Physcomitrella Patens)	gene	5
MaizeGDB (maize)	gene	780
MaizeGDB (maize)	gene_model	35323
SGN	gene	174
SGN	germplasm	4503

Total number of associations by evidence code:

Evidence Code	Associations Total#
IC	18101
IDA	20464
IEA	1
IEP	2012180
IGI	1
IMP	32076
ISS	21
NAS	30
TAS	5350

Total number of object types by evidence code:

Object Type	Evidence Code	Object Type Total#
protein	IDA	17312
protein	IEP	511798
protein	NAS	29
protein	TAS	88
	IDA	9
	IEP	2248
miRNA	IDA	22
miRNA	IEP	129
RNA	IEP	41
gene_product	IEP	1
gene_product	NAS	1
snoRNA	IEP	1
germplasm	IDA	3045
germplasm	IMP	18395
gene	IC	571
gene	IDA	76
gene	IEA	1
gene	IEP	438
gene	IGI	1
gene	IMP	7377
gene	ISS	21
gene	TAS	5262
QTL	IC	17530
QTL	IMP	6304
mRNA	IEP	9561
gene_model	IEP	1487963