Plant Ontology Release #0408 April 2008
Plant Ontology Database
Ontology updates
Number of terms:
Total terms 1128 Total children terms in Plant structure 852 New children terms in Plant structure 19 Total children terms in Plant growth and development 274 New children terms in Plant growth and development None
List of new children terms in Plant Structure:
PO ID Term name PO:0005028 inflorescence vascular system PO:0005029 root primordium PO:0008017 leaf sheath pulvinus PO:0008018 transition leaf PO:0008019 leaf lamina base PO:0008020 central zone of the leaf lamina PO:0008021 tertiary vein PO:0008022 quaternary vein PO:0008023 higher order vein PO:0008024 petiole proximal end PO:0008025 central zone of the petiole PO:0008026 petiole distal end PO:0008027 petiole adaxial epidermis PO:0008029 petiole abaxial epidermis PO:0008030 trichome cell PO:0008031 trichome branch PO:0008032 stomatal pore PO:0008033 phyllome whorl PO:0008034 leaf whorl Associations / Aannotations
Number of associations/annotations:
Total number of associations 58117 Number of associations NEW 18572 Total number of unique objects (genes, germplasms, QTLs) 22049 Number of unique objects NEW 4737
Number of associations from:
DB Associations Total# TAIR (Arabidopsis) 8263 NASC (Arabidopsis) 1897 Gramene (rice) 26280 MaizeGDB (maize) 5127 SGN (Capsicum, Hyoscyamus, lycopersicum, tabacum, tuberosum, melongena) 16550 Total number of individual object types by source DB:
DB Object Type Object Types Total# TAIR (Arabidopsis) gene 2573 NASC (Arabidopsis) germplasm 1897 Gramene (rice) gene 1679 Gramene (rice) QTL 8390 MaizeGDB (maize) gene 3470 SGN gene 33 SGN germplasm 4007 Total number of associations by evidence code:
Evidence Code Associations Total# IC 14096 IDA 2648 IEP 5560 IMP 35827 NAS 31 TAS 74 Total number of object types by evidence code:
Object Type Evidence Code Object Type Total# gene IDA 2648 gene IEP 5560 gene IMP 11141 gene NAS 31 gene TAS 74 QTL IC 14096 QTL IMP 6304 germplasm IMP 18382