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Jaiswal, Pankaj
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2013
N. T. V. Lingutla
,
“
Annotation of image segments with ontologies (AISO)
”
, Oregon State University, Corvallis, 2013.
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2006
A. Pujar
,
Jaiswal, P.
,
Kellogg, E. A.
,
Ilic, K.
,
Vincent, L.
,
Avraham, S.
,
Stevens, P.
,
Zapata, F.
,
Reiser, L.
,
Rhee, S. Y.
,
Sachs, M. M.
,
Schaeffer, M.
,
Stein, L.
,
Ware, D.
, and
McCouch, S.
,
“
Whole-plant growth stage ontology for angiosperms and its application in plant biology
”
,
Plant Physiology
, vol. 142, no. 2, pp. 414-28, 2006.
PubMed
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2007
K. Ilic
,
Kellogg, E. A.
,
Jaiswal, P.
,
Zapata, F.
,
Stevens, P. F.
,
Vincent, L. P.
,
Avraham, S.
,
Reiser, L.
,
Pujar, A.
,
Sachs, M. M.
,
Whitman, N. T.
,
McCouch, S. R.
,
Schaeffer, M. L.
,
Ware, D. H.
,
Stein, L. D.
, and
Rhee, S. Y.
,
“
The Plant Structure Ontology, a Unified Vocabulary of Anatomy and Morphology of a Flowering Plant
”
,
Plant Physiology
, vol. 143, no. 2, pp. 587-99, 2007.
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2005
P. Jaiswal
,
Avraham, S.
,
Ilic, K.
,
Kellogg, E. A.
,
McCouch, S.
,
Pujar, A.
,
Reiser, L.
,
Rhee, S. Y.
,
Sachs, M. M.
,
Schaeffer, M.
,
Stein, L.
,
Stevens, P.
,
Vincent, L.
,
Ware, D.
, and
Zapata, F.
,
“
Plant Ontology (PO): a Controlled Vocabulary of Plant Structures and Growth Stages
”
,
Comparative and Functional Genomics
, vol. 6, no. 7-8, pp. 388-97, 2005.
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2008
S. Avraham
,
Tung, C. - W.
,
Ilic, K.
,
Jaiswal, P.
,
Kellogg, E. A.
,
McCouch, S.
,
Pujar, A.
,
Reiser, L.
,
Rhee, S. Y.
,
Sachs, M. M.
,
Schaeffer, M.
,
Stein, L.
,
Stevens, P.
,
Vincent, L.
,
Zapata, F.
, and
Ware, D.
,
“
The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations
”
,
Nucleic Acids Research
, vol. 36, pp. D449-54, 2008.
DOI
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2013
L. Cooper
,
Walls, R. L.
,
Elser, J.
,
Gandolfo, M. A.
,
Stevenson, D. W.
,
Smith, B.
,
Preece, J.
,
Athreya, B.
,
Mungall, C. J.
,
Rensing, S.
,
Hiss, M.
,
Lang, D.
,
Reski, R.
,
Berardini, T. Z.
,
Li, D.
,
Huala, E.
,
Schaeffer, M.
,
Menda, N.
,
Arnaud, E.
,
Shrestha, R.
,
Yamazaki, Y.
, and
Jaiswal, P.
,
“
The Plant Ontology as a Tool for Comparative Plant Anatomy and Genomic Analyses
”
,
Plant & Cell Physiology
, vol. 54, no. 2, pp. 1-23, 2013.
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2012
R. L. Walls
,
Athreya, B.
,
Cooper, L.
,
Elser, J.
,
Gandolfo, M. A.
,
Jaiswal, P.
,
Mungall, C. J.
,
Preece, J.
,
Rensing, S.
,
Smith, B.
, and
Stevenson, D. W.
,
“
Ontologies as Integrative Tools for Plant Science
”
,
American Journal of Botany
, vol. 99, no. 8, pp. 1263-75, 2012.
PubMed
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2011
V. Shulaev
,
Sargent, D. J.
,
Crowhurst, R. N.
,
Mockler, T. C.
,
Folkerts, O.
,
Delcher, A. L.
,
Jaiswal, P.
,
Mockaitis, K.
,
Liston, A.
,
Mane, S. P.
,
Burns, P.
,
Davis, T. M.
,
Slovin, J. P.
,
Bassil, N.
,
Hellens, R. P.
,
Evans, C.
,
Harkins, T.
,
Kodira, C.
,
Desany, B.
,
Crasta, O. R.
,
Jensen, R. V.
,
Allan, A. C.
,
Michael, T. P.
,
Setubal, J. C.
,
Celton, J. - M.
,
Rees, J. D. G.
,
Williams, K. P.
,
Holt, S. H.
,
Rojas, J. J. R.
,
Chatterjee, M.
,
Liu, B.
,
Silva, H.
,
Meisel, L.
,
Adato, A.
,
Filichkin, S. A.
,
Troggio, M.
,
Viola, R.
,
Ashman, T. - L.
,
Wang, H.
,
Dharmawardhana, P.
,
Elser, J.
,
Raja, R.
,
Priest, H. D.
,
Bryant, D. W.
,
Fox, S. E.
,
Givan, S. A.
,
Wilhelm, L. J.
,
Naithani, S.
,
Christoffels, A.
,
Salama, D. Y.
,
Carter, J.
,
Girona, E. L.
,
Zdepski, A.
,
Wang, W.
,
Kerstetter, R. A.
,
Schwab, W.
,
Korban, S. S.
,
Davik, J.
,
Monfort, A.
,
Denoyes-Rothan, B.
,
Arus, P.
,
Mittler, R.
,
Flinn, B.
,
Aharoni, A.
,
Bennetzen, J. L.
,
Salzberg, S. L.
,
Dickerman, A. W.
,
Velasco, R.
,
Borodovsky, M.
,
Veilleux, R. E.
, and
Folta, K. M.
,
“
The genome of woodland strawberry (
Fragaria vesca
)
”
,
Nat Genet
, vol. 43, pp. 109 - 116, 2011.
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2015
A. R. Deans
,
Lewis, S. E.
,
Huala, E.
,
Anzaldo, S. S.
,
Ashburner, M.
,
Balhoff, J. P.
,
Blackburn, D. C.
,
Blake, J. A.
,
Burleigh, G. J.
,
Chanet, B.
,
Cooper, L. D.
,
Courtot, M.
,
Csösz, S.
,
Cui, H.
,
Dahdul, W.
,
Das, S.
,
Dececchi, A. T.
,
Dettai, A.
,
Diogo, R.
,
Druzinsky, R. E.
,
Dumontier, M.
,
Franz, N. M.
,
Friedrich, F.
,
Gkoutos, G. V.
,
Haendel, M.
,
Harmon, L. J.
,
Hayamizu, T. F.
,
He, Y.
,
Hines, H. M.
,
Ibrahim, N.
,
Jackson, L. M.
,
Jaiswal, P.
,
James-Zorn, C.
,
Köhler, S.
,
Lecointre, G.
,
Lapp, H.
,
Lawrence, C. J.
,
Le Novère, N.
,
Lundberg, J. G.
,
Macklin, J.
,
Mast, A. R.
,
Midford, P. E.
,
Mikó, I.
,
Mungall, C. J.
,
Oellrich, A.
,
Osumi-Sutherland, D.
,
Parkinson, H.
,
Ramírez, M. J.
,
Richter, S.
,
Robinson, P. N.
,
Ruttenberg, A.
,
Schulz, K. S.
,
Segerdell, E.
,
Seltmann, K. C.
,
Sharkey, M. J.
,
Smith, A. D.
,
Smith, B.
,
Specht, C. D.
,
Squires, B. R.
,
Thacker, R. W.
,
Thessen, A.
,
Fernandez-Triana, J.
,
Vihinen, M.
,
Vize, P. D.
,
Vogt, L.
,
Wall, C. E.
,
Walls, R. L.
,
Westerfeld, M.
,
Wharton, R. A.
,
Wirkner, C. S.
,
Woolley, J. B.
,
Yoder, M. J.
,
Zorn, A. M.
, and
Mabee, P.
,
“
Finding Our Way through Phenotypes
”
,
PLoS Biol
, vol. 13, p. e1002033, 2015.
DOI
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2012
F. Lens
,
Cooper, L.
,
Gandolfo, M. A.
,
Groover, P.
,
Jaiswal, P.
,
Lachenbruch, R.
,
Spicer, R.
,
Staton, D.
,
Stevenson, D. W.
,
Walls, R. L.
, and
Wegrzyn, J.
,
“
An extension of the Plant Ontology project supporting wood anatomy and development research
”
,
IAWA Journal
, vol. 33, pp. 113-117, 2012.
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2011
R. L. Walls
,
“
Using the Plant Ontology to Link Anatomical Structures to Gene Annotations in
Physcomitrella patens
”
,
Moss 2011
. Black Forest, Germany, 2011.
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R. L. Walls
,
“
Using the Plant Ontology to improve the interoperability of genomic and phenomic data sets
”
,
Plant Genomes & Biotechnology: from Genes to Networks
. Cold Spring Harbor Laboratory, New York, 2011.
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2013
E. Arnaud
,
“
The Species-Specific Crop Ontology (Generation Challenge Programme): Application and Integration into the Reference Plant Trait Ontology to Enable Data Mining on Phenotypes
”
,
Plant and Animal Genome XXI Conference
. San Diego, CA, 2013.
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P. Jaiswal
,
“
A Resource for a Common Reference Ontology for Plants
”
,
Plant and Animal Genome XXI Meeting
. San Diego, CA, 2013.
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2012
L. D. Cooper
,
“
The Plant Ontology: Linking Genomic and Phenomic Data Across Plant Taxa
”
,
Plant and Animal Genome XX Conference
. San Diego, CA, 2012.
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2010
J. L. Elser
,
“
Plant Ontology: Databases And Applications
”
,
Plant & Animal Genomes XVIII Conference
. San Diego, CA, 2010.
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2014
P. Jaiswal
,
“
Plant Environmental Condition Ontology (EO)
”
,
Fourth Annual Summit of the Phenotype Ontology Research Coordination Network
. Phenotype Research Coordination Network, Biosphere2, Tucson, AZ, 2014.
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2012
L. D. Cooper
,
“
Expanding the Plant Ontology: Linking Plant Anatomy and Development to Genomics Across Plant Taxa
”
,
Plant and Animal Genome XX Conference
. San Diego, CA, 2012.
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2014
L. Cooper
,
“
Common Reference Ontologies for Plant Biology (cROP): A Platform for Integrative Plant Genomics
”
,
Plant and Animal Genome XXII Meeting
. San Diego, CA, 2014.
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2012
P. Jaiswal
,
“
Annotating the Maize B73 Gene Expression Atlas in the Plant Ontology- A Tool for Plant Genomics.
”
,
54th Annual Maize Genetics Conference
. Portland, OR, 2012.
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L. D. Cooper
,
“
Annotating Gene Expression in
Physcomitrella patens
using the Plant Ontology: Facilitating Cross-Taxa Comparisons
”
,
Plant and Animal Genome XX Conference
. San Diego, CA, 2012.
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2010
J. L. Elser
,
“
Plant Ontology: Databases And Applications
”
,
Plant & Animal Genomes XVIII Conference
. San Diego, CA, 2010.
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2012
J. Preece
,
“
The Plant Ontology: A Tool for Linking Plant Anatomy and Development to Genomics Across Plant Taxa
”
,
Genome Informatics 2012
. Robinson College, Cambridge, UK, 2012.
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L. Cooper
,
“
The Plant Ontology: A Tool for Linking Plant Anatomy and Development to Genomics Across Plant Taxa
”
,
Plant Biology 2012
. Austin, Tx, 2012.
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2013
B. Atkinson
,
“
Plant Ontology, a controlled and structured plant vocabulary for all botanical disciplines
”
,
Botany 2013
. New Orleans, LA, 2013.
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