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Publications and Presentations

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[ Author(Desc)] Type Year
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A
C. N. Arighi, Carterette, B., Cohen, B. K., Krallinger, M., Wilbur, J. W., Fey, P., Dodson, R., Cooper, L., Van Slyke, C. E., Dahdul, W., Mabee, P., Li, D., Harris, B., Gillespie, M., Jimenez, S., Roberts, P., Matthews, L., Becker, K., Drabkin, H., Bello, S., Licata, L., Chatr-aryamontri, A., Schaeffer, M. L., Park, J., Haendel, M., Van Auken, K., Li, Y., Chan, J., Muller, H. - M., Cui, H., Balhoff, J. P., Chi-Yang Wu, J., Lu, Z., Wei, C. - H., Tudor, C. O., Raja, K., Subramani, S., Natarajan, J., Cejuela, J. M., Dubey, P., and Wu, C., An overview of the BioCreative 2012 Workshop Track III: interactive text mining task, Database, vol. 2013, 2013.
E. Arnaud, Cooper, L., Shrestha, R., Menda, N., Nelson, R. T., Matteis, L., Skofic, M., Bastow, R., Jaiswal, P., Mueller, L., and McLaren, G., Towards a Reference Plant Trait Ontology for Modeling Knowledge of Plant Traits and Phenotype, in International Conference on Knowledge Discovery and Information Retrieval (IC3K2012), Barcelona, Spain, 2012.
E. Arnaud, The Species-Specific Crop Ontology (Generation Challenge Programme): Application and Integration into the Reference Plant Trait Ontology to Enable Data Mining on Phenotypes, Plant and Animal Genome XXI Conference. San Diego, CA, 2013.
B. Atkinson, Plant Ontology, a controlled and structured plant vocabulary for all botanical disciplines, Botany 2013. New Orleans, LA, 2013.
S. Avraham, Tung, C. - W., Ilic, K., Jaiswal, P., Kellogg, E. A., McCouch, S., Pujar, A., Reiser, L., Rhee, S. Y., Sachs, M. M., Schaeffer, M., Stein, L., Stevens, P., Vincent, L., Zapata, F., and Ware, D., The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations, Nucleic Acids Research, vol. 36, pp. D449-54, 2008.
C
P. O. Consortium, The Plant Ontology™ Consortium and Plant Ontologies, Comparative and Functional Genomics, vol. 3, no. 2, pp. 137-142, 2002.
L. Cooper, The Plant Ontology and the Trait Ontology: Resources for Plant Genomics, Workshop on Crop Ontology and Phenotyping Data Interoperability. Montpellier, France, 2014.
L. Cooper, The Plant Ontology: A Tool for Linking Plant Anatomy and Development to Genomics Across Plant Taxa, Plant Biology 2012. Austin, Tx, 2012.
L. D. Cooper, Annotating the Maize B73 Gene Expression Atlas – A Plant Ontology Use Case for Genomics Data Curation, Biocuration 2012. Washington DC, USA, 2012.
L. D. Cooper, Annotating Gene Expression in Physcomitrella patens using the Plant Ontology: Facilitating Cross-Taxa Comparisons, Plant and Animal Genome XX Conference. San Diego, CA, 2012.
L. Cooper, Walls, R. L., Elser, J., Gandolfo, M. A., Stevenson, D. W., Smith, B., Preece, J., Athreya, B., Mungall, C. J., Rensing, S., Hiss, M., Lang, D., Reski, R., Berardini, T. Z., Li, D., Huala, E., Schaeffer, M., Menda, N., Arnaud, E., Shrestha, R., Yamazaki, Y., and Jaiswal, P., The Plant Ontology as a Tool for Comparative Plant Anatomy and Genomic Analyses, Plant & Cell Physiology, vol. 54, no. 2, pp. 1-23, 2013.
L. D. Cooper, The Plant Ontology: Linking Plant Anatomy and Development to Genomics Across Plant Taxa, Plant and Animal Genome XX Conference. San Diego, CA, 2012.
L. Cooper, The Plant Ontology: A Database for Plant Genomics, Plant Biology 2010. Quebec, Montreal, Canada, 2010.
L. D. Cooper, Expanding the Plant Ontology: Linking Plant Anatomy and Development to Genomics Across Plant Taxa, Plant and Animal Genome XX Conference. San Diego, CA, 2012.
L. D. Cooper, The Plant Ontology: Linking Genomic and Phenomic Data Across Plant Taxa, Plant and Animal Genome XX Conference. San Diego, CA, 2012.
L. Cooper, Development of the Reference Plant Trait Ontology: A Unified Resource for Plant Phenomics, Plant and Animal Genome XXI Conference. San Diego, CA, 2013.
L. Cooper, Common Reference Ontologies for Plant Biology (cROP): A Platform for Integrative Plant Genomics, Plant and Animal Genome XXII Meeting. San Diego, CA, 2014.
E
J. L. Elser, Plant Ontology: Databases And Applications, Plant & Animal Genomes XVIII Conference. San Diego, CA, 2010.
J. L. Elser, Plant Ontology: Databases And Applications, Plant & Animal Genomes XVIII Conference. San Diego, CA, 2010.

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