A. R.  Deans, Lewis, S. E., Huala, E., Anzaldo, S. S., Ashburner, M., Balhoff, J. P., Blackburn, D. C., Blake, J. A., Burleigh, G. J., Chanet, B., Cooper, L. D., Courtot, M., Csösz, S., Cui, H., Dahdul, W., Das, S., Dececchi, A. T., Dettai, A., Diogo, R., Druzinsky, R. E., Dumontier, M., Franz, N. M., Friedrich, F., Gkoutos, G. V., Haendel, M., Harmon, L. J., Hayamizu, T. F., He, Y., Hines, H. M., Ibrahim, N., Jackson, L. M., Jaiswal, P., James-Zorn, C., Köhler, S., Lecointre, G., Lapp, H., Lawrence, C. J., Le Novère, N., Lundberg, J. G., Macklin, J., Mast, A. R., Midford, P. E., Mikó, I., Mungall, C. J., Oellrich, A., Osumi-Sutherland, D., Parkinson, H., Ramírez, M. J., Richter, S., Robinson, P. N., Ruttenberg, A., Schulz, K. S., Segerdell, E., Seltmann, K. C., Sharkey, M. J., Smith, A. D., Smith, B., Specht, C. D., Squires, B. R., Thacker, R. W., Thessen, A., Fernandez-Triana, J., Vihinen, M., Vize, P. D., Vogt, L., Wall, C. E., Walls, R. L., Westerfeld, M., Wharton, R. A., Wirkner, C. S., Woolley, J. B., Yoder, M. J., Zorn, A. M., and Mabee, P., ?Finding Our Way through Phenotypes?, PLoS Biol, vol. 13, p. e1002033, 2015.

L.  Cooper, ?Common Reference Ontologies for Plant Biology (cROP): A Platform for Integrative Plant Genomics?, Plant and Animal Genome XXII Meeting. San Diego, CA, 2014.

P.  Jaiswal, ?Plant Environmental Condition Ontology (EO)?, Fourth Annual Summit of the Phenotype Ontology Research Coordination Network. Phenotype Research Coordination Network, Biosphere2, Tucson, AZ, 2014.

L.  Cooper, ?The Plant Ontology and the Trait Ontology: Resources for Plant Genomics?, Workshop on Crop Ontology and Phenotyping Data Interoperability. Montpellier, France, 2014.

J.  Preece, ?AISO: Annotation of Image Segments using Ontologies?, Plant and Animal Genome XXI Conference. San Diego, CA, 2013.

N. T. V.  Lingutla, ?Annotation of image segments with ontologies (AISO)?, Oregon State University, Corvallis, 2013.

E.  Huala, ?Development of a Unified Phenotype Dataset for Plants?, Plant and Animal Genome 2013. San Diego, CA, 2013.

L.  Cooper, ?Development of the Reference Plant Trait Ontology: A Unified Resource for Plant Phenomics?, Plant and Animal Genome XXI Conference. San Diego, CA, 2013.

C. N.  Arighi, Carterette, B., Cohen, B. K., Krallinger, M., Wilbur, J. W., Fey, P., Dodson, R., Cooper, L., Van Slyke, C. E., Dahdul, W., Mabee, P., Li, D., Harris, B., Gillespie, M., Jimenez, S., Roberts, P., Matthews, L., Becker, K., Drabkin, H., Bello, S., Licata, L., Chatr-aryamontri, A., Schaeffer, M. L., Park, J., Haendel, M., Van Auken, K., Li, Y., Chan, J., Muller, H. - M., Cui, H., Balhoff, J. P., Chi-Yang Wu, J., Lu, Z., Wei, C. - H., Tudor, C. O., Raja, K., Subramani, S., Natarajan, J., Cejuela, J. M., Dubey, P., and Wu, C., ?An overview of the BioCreative 2012 Workshop Track III: interactive text mining task?, Database, vol. 2013, 2013.

B.  Atkinson, ?Plant Ontology, a controlled and structured plant vocabulary for all botanical disciplines?, Botany 2013. New Orleans, LA, 2013.

L.  Cooper, Walls, R. L., Elser, J., Gandolfo, M. A., Stevenson, D. W., Smith, B., Preece, J., Athreya, B., Mungall, C. J., Rensing, S., Hiss, M., Lang, D., Reski, R., Berardini, T. Z., Li, D., Huala, E., Schaeffer, M., Menda, N., Arnaud, E., Shrestha, R., Yamazaki, Y., and Jaiswal, P., ?The Plant Ontology as a Tool for Comparative Plant Anatomy and Genomic Analyses?, Plant & Cell Physiology, vol. 54, no. 2, pp. 1-23, 2013.

P.  Jaiswal, ?A Resource for a Common Reference Ontology for Plants?, Plant and Animal Genome XXI Meeting. San Diego, CA, 2013.

E.  Arnaud, ?The Species-Specific Crop Ontology (Generation Challenge Programme): Application and Integration into the Reference Plant Trait Ontology to Enable Data Mining on Phenotypes?, Plant and Animal Genome XXI Conference. San Diego, CA, 2013.

L. D.  Cooper, ?Annotating Gene Expression in Physcomitrella patens using the Plant Ontology: Facilitating Cross-Taxa Comparisons?, Plant and Animal Genome XX Conference. San Diego, CA, 2012.

L. D.  Cooper, ?Annotating the Maize B73 Gene Expression Atlas ? A Plant Ontology Use Case for Genomics Data Curation?, Biocuration 2012. Washington DC, USA, 2012.

P.  Jaiswal, ?Annotating the Maize B73 Gene Expression Atlas in the Plant Ontology- A Tool for Plant Genomics.?, 54th Annual Maize Genetics Conference. Portland, OR, 2012.

L. D.  Cooper, ?Expanding the Plant Ontology: Linking Plant Anatomy and Development to Genomics Across Plant Taxa?, Plant and Animal Genome XX Conference. San Diego, CA, 2012.

F.  Lens, Cooper, L., Gandolfo, M. A., Groover, P., Jaiswal, P., Lachenbruch, R., Spicer, R., Staton, D., Stevenson, D. W., Walls, R. L., and Wegrzyn, J., ?An extension of the Plant Ontology project supporting wood anatomy and development research?, IAWA Journal, vol. 33, pp. 113-117, 2012.

R. L.  Walls, ?Mapping of glossary terms from the Flora of North America to the Plant Ontology enhances both resources?, in 3rd International Conference on Biomedical Ontology (ICBO 2012), Graz, Austria, 2012.

R. L.  Walls, Athreya, B., Cooper, L., Elser, J., Gandolfo, M. A., Jaiswal, P., Mungall, C. J., Preece, J., Rensing, S., Smith, B., and Stevenson, D. W., ?Ontologies as Integrative Tools for Plant Science?, American Journal of Botany, vol. 99, no. 8, pp. 1263-75, 2012.

R.  Walls, Smith, B., Elser, J., and Goldfain, A., ?A plant disease extension of the Infectious Disease Ontology?, in International Conference on Biomedical Ontology (ICBO-2012), Graz, Austria, 2012, vol. 897.

J.  Preece, ?The Plant Ontology: A Tool for Linking Plant Anatomy and Development to Genomics Across Plant Taxa?, Genome Informatics 2012. Robinson College, Cambridge, UK, 2012.

L.  Cooper, ?The Plant Ontology: A Tool for Linking Plant Anatomy and Development to Genomics Across Plant Taxa?, Plant Biology 2012. Austin, Tx, 2012.

L. D.  Cooper, ?The Plant Ontology: Linking Genomic and Phenomic Data Across Plant Taxa?, Plant and Animal Genome XX Conference. San Diego, CA, 2012.

L. D.  Cooper, ?The Plant Ontology: Linking Plant Anatomy and Development to Genomics Across Plant Taxa?, Plant and Animal Genome XX Conference. San Diego, CA, 2012.

K.  Van Auken, Fey, P., Berardini, T. Z., Dodson, R., Cooper, L., Li, D., Chan, J., Li, Y., Basu, S., Muller, H. - M., Chisholm, R., Huala, E., and Sternberg, P. W., ?Text mining in the biocuration workflow: applications for literature curation at WormBase, dictyBase and TAIR?, Database, vol. 2012, 2012.

E.  Arnaud, Cooper, L., Shrestha, R., Menda, N., Nelson, R. T., Matteis, L., Skofic, M., Bastow, R., Jaiswal, P., Mueller, L., and McLaren, G., ?Towards a Reference Plant Trait Ontology for Modeling Knowledge of Plant Traits and Phenotype?, in International Conference on Knowledge Discovery and Information Retrieval (IC3K2012), Barcelona, Spain, 2012.

V.  Shulaev, Sargent, D. J., Crowhurst, R. N., Mockler, T. C., Folkerts, O., Delcher, A. L., Jaiswal, P., Mockaitis, K., Liston, A., Mane, S. P., Burns, P., Davis, T. M., Slovin, J. P., Bassil, N., Hellens, R. P., Evans, C., Harkins, T., Kodira, C., Desany, B., Crasta, O. R., Jensen, R. V., Allan, A. C., Michael, T. P., Setubal, J. C., Celton, J. - M., Rees, J. D. G., Williams, K. P., Holt, S. H., Rojas, J. J. R., Chatterjee, M., Liu, B., Silva, H., Meisel, L., Adato, A., Filichkin, S. A., Troggio, M., Viola, R., Ashman, T. - L., Wang, H., Dharmawardhana, P., Elser, J., Raja, R., Priest, H. D., Bryant, D. W., Fox, S. E., Givan, S. A., Wilhelm, L. J., Naithani, S., Christoffels, A., Salama, D. Y., Carter, J., Girona, E. L., Zdepski, A., Wang, W., Kerstetter, R. A., Schwab, W., Korban, S. S., Davik, J., Monfort, A., Denoyes-Rothan, B., Arus, P., Mittler, R., Flinn, B., Aharoni, A., Bennetzen, J. L., Salzberg, S. L., Dickerman, A. W., Velasco, R., Borodovsky, M., Veilleux, R. E., and Folta, K. M., ?The genome of woodland strawberry (Fragaria vesca)?, Nat Genet, vol. 43, pp. 109 - 116, 2011.

R. L.  Walls, ?The Plant Ontology: an updated tool for all plant biologists?, International Botanical Congress (IBC2011). Melbourne, Australia, 2011.

J.  Preece, ?Planteome Annotation Wiki: A Semantic Application for the Community Curation of Plant Genotypes and Phenotypes?, in SWAT4LS 2011, London, UK, 2011, pp. 96-97.

J.  Preece, ?Planteome Annotation Wiki: A Semantic Web Application for the Community Curation of Plant Genotypes and Phenotype.?, in 4th International Workshop on Semantic Web Applications and Tools for Life Sciences, Univ. of London and the Wellcome Trust Collection Conference Center (London, UK), 2011.

R. L.  Walls, ?Using the Plant Ontology to improve the interoperability of genomic and phenomic data sets?, Plant Genomes & Biotechnology: from Genes to Networks. Cold Spring Harbor Laboratory, New York, 2011.

R. L.  Walls, ?Using the Plant Ontology to Link Anatomical Structures to Gene Annotations in Physcomitrella patens?, Moss 2011. Black Forest, Germany, 2011.

R. L.  Walls, ?The Plant Ontology: A Common Reference Ontology for Plants?, Bio-Ontologies 2010: Semantic Applications in Life Sciences. Boston, MA, 2010.

L.  Cooper, ?The Plant Ontology: A Database for Plant Genomics?, Plant Biology 2010. Quebec, Montreal, Canada, 2010.

R. L.  Walls, ?The Plant Ontology: a tool for structural, developmental, and molecular plant biologists?, Botany 2010. Providence, RI, 2010.

J. L.  Elser, ?Plant Ontology: Databases And Applications?, Plant & Animal Genomes XVIII Conference. San Diego, CA, 2010.

J. L.  Elser, ?Plant Ontology: Databases And Applications?, Plant & Animal Genomes XVIII Conference. San Diego, CA, 2010.

J.  Preece, ?A Semantic Wiki for Genotype/Phenotype Annotation in Plant Species?, in NETTAB 2010 conference on Biological Wikis, Naples, Italy, 2010, pp. 109-112.

C. - W.  Tung, ?Plant and Trait Ontology?, GCP Ontology Workshop. Rome, Italy, 2009.

C. - W.  Tung, ?POC poster presentation?, 3rd International Biocuration Conference. Berlin, Germany, 2009.

C. - W.  Tung, ?POC poster presentation?, Plant & Animal Genome Conference XVII. San Diego, CA, 2009.

S.  Avraham, Tung, C. - W., Ilic, K., Jaiswal, P., Kellogg, E. A., McCouch, S., Pujar, A., Reiser, L., Rhee, S. Y., Sachs, M. M., Schaeffer, M., Stein, L., Stevens, P., Vincent, L., Zapata, F., and Ware, D., ?The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations?, Nucleic Acids Research, vol. 36, pp. D449-54, 2008.

K.  Ilic, Rhee, S. Y., Kellogg, E. A., and Stevens, P. F., ?Plant Structure Ontology (PSO) - A Morphological and Anatomical Ontology of Flowering Plants?, in Anatomy Ontologies for Bioinformatics, vol. 6, A.  Burger, Davidson, D., and Baldock, R., Eds. London: Springer, 2008, pp. 27-42.

K.  Ilic, Kellogg, E. A., Jaiswal, P., Zapata, F., Stevens, P. F., Vincent, L. P., Avraham, S., Reiser, L., Pujar, A., Sachs, M. M., Whitman, N. T., McCouch, S. R., Schaeffer, M. L., Ware, D. H., Stein, L. D., and Rhee, S. Y., ?The Plant Structure Ontology, a Unified Vocabulary of Anatomy and Morphology of a Flowering Plant?, Plant Physiology, vol. 143, no. 2, pp. 587-99, 2007.

A.  Pujar, Jaiswal, P., Kellogg, E. A., Ilic, K., Vincent, L., Avraham, S., Stevens, P., Zapata, F., Reiser, L., Rhee, S. Y., Sachs, M. M., Schaeffer, M., Stein, L., Ware, D., and McCouch, S., ?Whole-plant growth stage ontology for angiosperms and its application in plant biology?, Plant Physiology, vol. 142, no. 2, pp. 414-28, 2006.

P.  Jaiswal, Avraham, S., Ilic, K., Kellogg, E. A., McCouch, S., Pujar, A., Reiser, L., Rhee, S. Y., Sachs, M. M., Schaeffer, M., Stein, L., Stevens, P., Vincent, L., Ware, D., and Zapata, F., ?Plant Ontology (PO): a Controlled Vocabulary of Plant Structures and Growth Stages?, Comparative and Functional Genomics, vol. 6, no. 7-8, pp. 388-97, 2005.

P. O.  Consortium, ?The Plant Ontology? Consortium and Plant Ontologies?, Comparative and Functional Genomics, vol. 3, no. 2, pp. 137-142, 2002.