life of whole plant stage

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Annotations to life of whole plant stage ; PO:0025337 and its children

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portion of vascular tissue ; PO:0009015

A portion of plant tissue (PO:0009007) that has as part one or more tracheary elements (PO:0000290) or sieve elements (PO:0025406).

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
ACT12
AT3G46520
protein from Arabidopsis thaliana PMID:8771777 TAIR GO
AGB1
AT4G34460
protein from Arabidopsis thaliana PMID:18441222 TAIR GO
AGO10
AT5G43810
protein from Arabidopsis thaliana PMID:14564520 TAIR GO
PMID:18653559
AGO6
AT2G32940
protein from Arabidopsis thaliana PMID:20173091 TAIR GO
AGP31
AT1G28290
protein from Arabidopsis thaliana PMID:17885091 TAIR GO
AHP4
AT3G16360
protein from Arabidopsis thaliana PMID:18296723 TAIR GO
ARAD1
AT2G35100
protein from Arabidopsis thaliana PMID:16377743 TAIR GO
ARF19
AT1G19220
protein from Arabidopsis thaliana PMID:15659631 TAIR GO
ARF2
AT5G62000
protein from Arabidopsis thaliana PMID:15960614 TAIR GO
ARK3
AT1G12430
protein from Arabidopsis thaliana PMID:17971038 TAIR GO
AT1G27030.1
AT1G27030
protein from Arabidopsis thaliana PMID:18296723 TAIR GO
AT1G52000.1
AT1G52000
protein from Arabidopsis thaliana PMID:18296723 TAIR GO
AT1G57590.1
AT1G57590
protein from Arabidopsis thaliana PMID:18296723 TAIR GO
AT1G65690.1
AT1G65690
protein from Arabidopsis thaliana PMID:18296723 TAIR GO
AT1G80130.1
AT1G80130
protein from Arabidopsis thaliana PMID:18296723 TAIR GO
AT2G33260.1
AT2G33260
protein from Arabidopsis thaliana PMID:20687964 TAIR GO
AT2G37870.1
AT2G37870
protein from Arabidopsis thaliana PMID:18296723 TAIR GO
AT3G02480.1
AT3G02480
protein from Arabidopsis thaliana PMID:18296723 TAIR GO
AT3G25290.1
AT3G25290
protein from Arabidopsis thaliana PMID:18296723 TAIR GO
AT3G53980.1
AT3G53980
protein from Arabidopsis thaliana PMID:18296723 TAIR GO
AT4G00670.1
AT4G00670
protein from Arabidopsis thaliana PMID:18296723 TAIR GO
AT4G14090.1
AT4G14090
protein from Arabidopsis thaliana PMID:18296723 TAIR GO
AT4G14270.1
AT4G14270
protein from Arabidopsis thaliana PMID:18296723 TAIR GO
AT5G11080.2
AT5G11080
protein from Arabidopsis thaliana PMID:20687964 TAIR GO
AT5G37970.1
AT5G37970
protein from Arabidopsis thaliana PMID:18296723 TAIR GO
ATCAD4
AT3G19450
protein from Arabidopsis thaliana PMID:17467016 TAIR GO
ATHB-15
AT1G52150
protein from Arabidopsis thaliana PMID:15705957 TAIR GO
BAM4
AT5G55700
protein from Arabidopsis thaliana PMID:20153546 TAIR GO
BC1
BRITTLE CULM 1
gene from Oryza sativa PMID:12000455 Gramene
(via Gramene Genes)
BCAT-2
AT1G10070
protein from Arabidopsis thaliana PMID:18296723 TAIR GO
BETA-VPE
AT1G62710
protein from Arabidopsis thaliana PMID:18296723 TAIR GO
BGL2
AT3G57260
protein from Arabidopsis thaliana PMID:18296723 TAIR GO
bHLH39
AT3G56980
protein from Arabidopsis thaliana PMID:18296723 TAIR GO
BPS1
At1g01550
gene from Arabidopsis thaliana PMID:25774204 POC:Ethan Johnson
(via TAIR)
CAD1
AT1G72680
protein from Arabidopsis thaliana PMID:17467016 TAIR GO
CAD5
AT4G34230
protein from Arabidopsis thaliana PMID:17467016 TAIR GO
CAD6
AT4G37970
protein from Arabidopsis thaliana PMID:17467016 TAIR GO
CAD9
AT4G39330
protein from Arabidopsis thaliana PMID:17467016 TAIR GO
CALS5
AT2G13680
protein from Arabidopsis thaliana PMID:15842618 TAIR GO
CAX1
AT2G38170
protein from Arabidopsis thaliana PMID:16055687 TAIR GO
CBL1
AT4G17615
protein from Arabidopsis thaliana PMID:17092313 TAIR GO
CDC48
AT3G09840
protein from Arabidopsis thaliana PMID:8521820 TAIR GO
CDF1
AT5G62430
protein from Arabidopsis thaliana PMID:16002617 TAIR GO
CEG
AT3G22650
protein from Arabidopsis thaliana PMID:16525894 TAIR GO
CHI
AT2G43570
protein from Arabidopsis thaliana PMID:18296723 TAIR GO
CIPK1
AT3G17510
protein from Arabidopsis thaliana PMID:17092313 TAIR GO
COR15A
AT2G42540
protein from Arabidopsis thaliana PMID:18296723 TAIR GO
CRN
AT5G13290
protein from Arabidopsis thaliana PMID:18381924 TAIR GO
CT-BMY
AT4G17090
protein from Arabidopsis thaliana PMID:20153546 TAIR GO
CYCA2;3
AT1G15570
protein from Arabidopsis thaliana PMID:16415207 TAIR GO
CYL1
AT5G13690
protein from Arabidopsis thaliana PMID:18782908 TAIR GO
CYTC-2
AT4G10040
protein from Arabidopsis thaliana PMID:16113211 TAIR GO
DAZ2
AT4G35280
protein from Arabidopsis thaliana PMID:20687964 TAIR GO
DCAF1
AT4G31160
protein from Arabidopsis thaliana PMID:18552200 TAIR GO
DEL1
AT3G48160
protein from Arabidopsis thaliana PMID:15649366 TAIR GO
DSH1
Dihydrosphingosine C4 hydroxylase
gene from Oryza sativa GR ref:5654 Gramene
(via Gramene Genes)
ECA3
AT1G10130
protein from Arabidopsis thaliana PMID:18024560 TAIR GO
PMID:18567829
ELI3-1
AT4G37980
protein from Arabidopsis thaliana PMID:17467016 TAIR GO
ELI3-2
AT4G37990
protein from Arabidopsis thaliana PMID:17467016 TAIR GO
ERD14
AT1G76180
protein from Arabidopsis thaliana PMID:11292073 TAIR GO
ERF1-1
AT5G47880
protein from Arabidopsis thaliana PMID:16113224 TAIR GO
EXLB1
AT4G17030
protein from Arabidopsis thaliana PMID:18296723 TAIR GO
FBP7
AT1G21760
protein from Arabidopsis thaliana PMID:17240087 TAIR GO
FES1
AT2G33835
protein from Arabidopsis thaliana PMID:16291783 TAIR GO
FKD1
AT3G63300
protein from Arabidopsis thaliana PMID:20626652 TAIR GO
GG1
AT3G63420
protein from Arabidopsis thaliana PMID:18441222 TAIR GO
GGT1
AT4G39640
protein from Arabidopsis thaliana PMID:17316175 TAIR GO
GPT2
AT1G61800
protein from Arabidopsis thaliana PMID:18296723 TAIR GO
GSTF12
AT5G17220
protein from Arabidopsis thaliana PMID:18296723 TAIR GO
HAI2
AT1G07430
protein from Arabidopsis thaliana PMID:18296723 TAIR GO
HB-7
AT2G46680
protein from Arabidopsis thaliana PMID:18296723 TAIR GO
HB-8
AT4G32880
protein from Arabidopsis thaliana PMID:8575317 TAIR GO
HB21
AT2G02540
protein from Arabidopsis thaliana PMID:16244158 TAIR GO
HIS1-3
AT2G18050
protein from Arabidopsis thaliana PMID:18296723 TAIR GO
HVT1
AT2G30800
protein from Arabidopsis thaliana PMID:9225469 TAIR GO
IDL2
AT5G64667
protein from Arabidopsis thaliana PMID:18660431 TAIR GO
IDL3
AT5G09805
protein from Arabidopsis thaliana PMID:18660431 TAIR GO
IDL4
AT3G18715
protein from Arabidopsis thaliana PMID:18660431 TAIR GO
IDL5
AT1G76952
protein from Arabidopsis thaliana PMID:18660431 TAIR GO
IQD1
AT3G09710
protein from Arabidopsis thaliana PMID:15960618 TAIR GO
ITN1
AT3G12360
protein from Arabidopsis thaliana PMID:18643991 TAIR GO
JAL23
AT2G39330
protein from Arabidopsis thaliana PMID:18296723 TAIR GO
KCO1
AT5G55630
protein from Arabidopsis thaliana PMID:16984403 TAIR GO
KCO3
AT5G46360
protein from Arabidopsis thaliana PMID:16984403 TAIR GO
KCO5
AT4G01840
protein from Arabidopsis thaliana PMID:16984403 TAIR GO
LTI30
AT3G50970
protein from Arabidopsis thaliana PMID:11292073 TAIR GO
LTP3
AT5G59320
protein from Arabidopsis thaliana PMID:18296723 TAIR GO
LTP4
AT5G59310
protein from Arabidopsis thaliana PMID:18296723 TAIR GO
MAX2
AT2G42620
protein from Arabidopsis thaliana PMID:17951458 TAIR GO
MBP1
AT1G52040
protein from Arabidopsis thaliana PMID:18296723 TAIR GO
MCA1
AT4G35920
protein from Arabidopsis thaliana PMID:20097794 TAIR GO
MCA2
AT2G17780
protein from Arabidopsis thaliana PMID:20097794 TAIR GO
MIR160A
AT2G39175
miRNA from Arabidopsis thaliana PMID:20136729 TAIR GO
MKK3
AT5G40440
protein from Arabidopsis thaliana PMID:17933903 TAIR GO
MTPA2
AT3G58810
protein from Arabidopsis thaliana PMID:16709200 TAIR GO
MYB51
AT1G18570
protein from Arabidopsis thaliana PMID:17461791 TAIR GO
MYB87
AT4G37780
protein from Arabidopsis thaliana PMID:20687964 TAIR GO
N116
auxin overproducing
germplasm from Arabidopsis thaliana NASC:N116 NASC
NATA1
AT2G39030
protein from Arabidopsis thaliana PMID:18296723 TAIR GO
NF-YA10
AT5G06510
protein from Arabidopsis thaliana PMID:18296723 TAIR GO
NPH4
AT5G20730
protein from Arabidopsis thaliana PMID:15659631 TAIR GO
NSI
AT1G32070
protein from Arabidopsis thaliana PMID:16461385 TAIR GO
NST1
AT2G46770
protein from Arabidopsis thaliana PMID:16214898 TAIR GO
NTL8
AT2G27300
protein from Arabidopsis thaliana PMID:17410378 TAIR GO
NUDT24
AT5G19470
protein from Arabidopsis thaliana PMID:18296723 TAIR GO
OASA1
AT4G14880
protein from Arabidopsis thaliana PMID:11121418 TAIR GO
PAP17
AT3G17790
protein from Arabidopsis thaliana PMID:18296723 TAIR GO
PER64
AT5G42180
protein from Arabidopsis thaliana PMID:18296723 TAIR GO
PHB
AT2G34710
protein from Arabidopsis thaliana PMID:15598805 TAIR GO
PHO2
AT2G33770
protein from Arabidopsis thaliana PMID:18390805 TAIR GO
PHV
AT1G30490
protein from Arabidopsis thaliana PMID:14561401 TAIR GO
PID
AT2G34650
protein from Arabidopsis thaliana PMID:11641228 TAIR GO
PLA2-BETA
AT2G19690
protein from Arabidopsis thaliana PMID:18725378 TAIR GO
PLDP2
AT3G05630
protein from Arabidopsis thaliana PMID:16617110 TAIR GO
PMT5
AT3G18830
protein from Arabidopsis thaliana PMID:15598803 TAIR GO
PNH1
PINHEAD 1
gene from Oryza sativa PMID:16808934 Gramene
(via Gramene Genes)
PNP-A
AT2G18660
protein from Arabidopsis thaliana PMID:18296723 TAIR GO
PYD4
AT3G08860
protein from Arabidopsis thaliana PMID:18296723 TAIR GO
QQT1
AT5G22370
protein from Arabidopsis thaliana PMID:17419841 TAIR GO
RBK1
AT5G10520
protein from Arabidopsis thaliana PMID:18088316 TAIR GO
RBL
AT3G21060
protein from Arabidopsis thaliana PMID:21423667 TAIR GO
REV
AT5G60690
protein from Arabidopsis thaliana PMID:15598805 TAIR GO
ROXY1
AT3G02000
protein from Arabidopsis thaliana PMID:15728668 TAIR GO
RTE1
AT2G26070
protein from Arabidopsis thaliana PMID:17999643 TAIR GO
SAC1
AT1G22620
protein from Arabidopsis thaliana PMID:15805481 TAIR GO
SCP2
AT5G42890
protein from Arabidopsis thaliana PMID:18687588 TAIR GO
SIM
AT5G04470
protein from Arabidopsis thaliana PMID:17098811 TAIR GO
SIP1;2
AT5G18290
protein from Arabidopsis thaliana PMID:16223486 TAIR GO
SIP1A
AT3G04090
protein from Arabidopsis thaliana PMID:16223486 TAIR GO
SIP2;1
AT3G56950
protein from Arabidopsis thaliana PMID:16223486 TAIR GO
sks16
AT2G23630
protein from Arabidopsis thaliana PMID:22992509 TAIR GO
SPL9
AT2G42200
protein from Arabidopsis thaliana PMID:18492871 TAIR GO
SVL1
AT5G55480
protein from Arabidopsis thaliana PMID:18718934 TAIR GO
TCH2
AT5G37770
protein from Arabidopsis thaliana PMID:16113225 TAIR GO
TCP14
AT3G47620
protein from Arabidopsis thaliana PMID:17953649 TAIR GO
TMAC2
AT3G02140
protein from Arabidopsis thaliana PMID:18484180 TAIR GO
TPST
AT1G08030
protein from Arabidopsis thaliana PMID:19666544 TAIR GO
TRO
AT1G51450
protein from Arabidopsis thaliana PMID:21423667 TAIR GO
TSD2
AT1G78240
protein from Arabidopsis thaliana PMID:17461780 TAIR GO
TUB8
AT5G23860
protein from Arabidopsis thaliana PMID:9678573 TAIR GO
UBC4
AT5G41340
protein from Arabidopsis thaliana PMID:8790283 TAIR GO
VLN1
AT2G29890
protein from Arabidopsis thaliana PMID:10631247 TAIR GO
YUC4
AT5G11320
protein from Arabidopsis thaliana PMID:16818609 TAIR GO
ZEU1
AT5G59440
protein from Arabidopsis thaliana PMID:18036198 TAIR GO
ZIP4
AT1G10970
protein from Arabidopsis thaliana PMID:18296723 TAIR GO

phloem ; PO:0005417

A portion of vascular tissue (PO:0009015) that has as parts sieve elements (PO:0025406).

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
ABCB11
AT1G02520
protein from Arabidopsis thaliana PMID:21239383 TAIR GO
ABCB15
AT3G28345
protein from Arabidopsis thaliana PMID:21239383 TAIR GO
ABCG11
AT1G17840
protein from Arabidopsis thaliana PMID:24112720 TAIR GO
ABCG14
AT1G31770
protein from Arabidopsis thaliana PMID:24112720 TAIR GO
ABCG9
AT4G27420
protein from Arabidopsis thaliana PMID:24112720 TAIR GO
ALDH11A3
AT2G24270
protein from Arabidopsis thaliana PMID:20442276 TAIR GO
ALS3
AT2G37330
protein from Arabidopsis thaliana PMID:15659095 TAIR GO
PMID:18485061
AT1G03220.1
AT1G03220
protein from Arabidopsis thaliana PMID:20442276 TAIR GO
AT1G33600.1
AT1G33600
protein from Arabidopsis thaliana PMID:20442276 TAIR GO
AT1G33610.1
AT1G33610
protein from Arabidopsis thaliana PMID:20442276 TAIR GO
AT1G78850.1
AT1G78850
protein from Arabidopsis thaliana PMID:20442276 TAIR GO
AT2G03500.1
AT2G03500
protein from Arabidopsis thaliana PMID:15923329 TAIR GO
AT2G28810.1
AT2G28810
protein from Arabidopsis thaliana PMID:16581911 TAIR GO
AT3G43430.1
AT3G43430
protein from Arabidopsis thaliana PMID:16581911 TAIR GO
BZIP9
AT5G24800
protein from Arabidopsis thaliana PMID:16581911 TAIR GO
C
CHROMOGEN FOR ANTHOCYANIN
gene from Oryza sativa PMID:15255870 Gramene
(via Gramene Genes)
CalS7
AT1G06490
protein from Arabidopsis thaliana PMID:21175885 TAIR GO
CAT3
AT1G20620
protein from Arabidopsis thaliana PMID:20442276 TAIR GO
CCH
AT3G56240
protein from Arabidopsis thaliana PMID:18485061 TAIR GO
CLV1
AT1G75820
protein from Arabidopsis thaliana PMID:15923329 TAIR GO
CPC
AT2G46410
protein from Arabidopsis thaliana PMID:16581911 TAIR GO
DAG1
AT3G61850
protein from Arabidopsis thaliana PMID:11842145 TAIR GO
DAR2
AT2G39830
protein from Arabidopsis thaliana PMID:21749503 TAIR GO
DELTA-TIP
AT3G16240
protein from Arabidopsis thaliana PMID:8624437 TAIR GO
DHAR1
AT1G19570
protein from Arabidopsis thaliana PMID:20442276 TAIR GO
FTIP1
AT5G06850
protein from Arabidopsis thaliana PMID:22529749 TAIR GO
GATL10
AT3G28340
protein from Arabidopsis thaliana PMID:21300919 TAIR GO
GATL3
AT1G13250
protein from Arabidopsis thaliana PMID:21300919 TAIR GO
GATL6
AT4G02130
protein from Arabidopsis thaliana PMID:21300919 TAIR GO
GATL7
AT3G62660
protein from Arabidopsis thaliana PMID:21300919 TAIR GO
GER3
AT5G20630
protein from Arabidopsis thaliana PMID:20442276 TAIR GO
GGT1
AT4G39640
protein from Arabidopsis thaliana PMID:17316175 TAIR GO
GSTF10
AT2G30870
protein from Arabidopsis thaliana PMID:20442276 TAIR GO
GSTF2
AT4G02520
protein from Arabidopsis thaliana PMID:20442276 TAIR GO
GSTF3
AT2G02930
protein from Arabidopsis thaliana PMID:20442276 TAIR GO
GSTF9
AT2G30860
protein from Arabidopsis thaliana PMID:18485061 TAIR GO
PMID:20442276
GSTU19
AT1G78380
protein from Arabidopsis thaliana PMID:20442276 TAIR GO
GUT1
AT5G61840
protein from Arabidopsis thaliana PMID:18980662 TAIR GO
HCA2
AT5G62940
protein from Arabidopsis thaliana PMID:19915089 TAIR GO
HKT1
AT4G10310
protein from Arabidopsis thaliana PMID:12727868 TAIR GO
HOG1
AT4G13940
protein from Arabidopsis thaliana PMID:20442276 TAIR GO
INT4
AT4G16480
protein from Arabidopsis thaliana PMID:16603666 TAIR GO
IPL3
INHIBITOR FOR PURPLE LEAF 3
gene from Oryza sativa PMID:16926158 Gramene
(via Gramene Genes)
ISI1
AT4G27750
protein from Arabidopsis thaliana TAIR:Publication:501713883 TAIR GO
PMID:16805736
KAN
AT5G16560
protein from Arabidopsis thaliana PMID:14561401 TAIR GO
KNAT4
AT5G11060
protein from Arabidopsis thaliana PMID:19704797 TAIR GO
KT2/3
AT4G22200
protein from Arabidopsis thaliana PMID:10377458 TAIR GO
PMID:18485061
LGT9
AT1G24170
protein from Arabidopsis thaliana PMID:21300919 TAIR GO
LOS2
AT2G36530
protein from Arabidopsis thaliana PMID:20442276 TAIR GO
mtLPD1
AT1G48030
protein from Arabidopsis thaliana PMID:20442276 TAIR GO
mtLPD2
AT3G17240
protein from Arabidopsis thaliana PMID:20442276 TAIR GO
MYR1
AT5G18240
protein from Arabidopsis thaliana PMID:15923329 TAIR GO
MYR2
AT3G04030
protein from Arabidopsis thaliana PMID:15923329 TAIR GO
NAC082
AT5G09330
protein from Arabidopsis thaliana PMID:18485061 TAIR GO
NIP6;1
AT1G80760
protein from Arabidopsis thaliana PMID:18952773 TAIR GO
NPF1.2
AT1G52190
protein from Arabidopsis thaliana PMID:24006285 TAIR GO
NPF2.13
AT1G69870
protein from Arabidopsis thaliana PMID:19734434 TAIR GO
NPF8.1
AT3G54140
protein from Arabidopsis thaliana PMID:15500465 TAIR GO
NRT1.12
AT3G16180
protein from Arabidopsis thaliana PMID:24006285 TAIR GO
NTHK1
ethylene receptor homolog
gene from Nicotiana PMID:12154144 SGN
(via SGN Genes)
OBP2
AT1G07640
protein from Arabidopsis thaliana PMID:16581911 TAIR GO
OPT3
AT4G16370
protein from Arabidopsis thaliana PMID:24867923 TAIR GO
PGR5
AT2G05620
protein from Arabidopsis thaliana PMID:18663471 TAIR GO
PN
PURPLE NODE
gene from Oryza sativa PMID:16263903 Gramene
(via Gramene Genes)
PP2-A1
AT4G19840
protein from Arabidopsis thaliana PMID:12529520 TAIR GO
PMID:20442276
PP2-A2
AT4G19850
protein from Arabidopsis thaliana PMID:12529520 TAIR GO
PMID:20442276
PROT1
AT2G39890
protein from Arabidopsis thaliana PMID:15618414 TAIR GO
QUA1
AT3G25140
protein from Arabidopsis thaliana PMID:16059719 TAIR GO
ROC3
AT2G16600
protein from Arabidopsis thaliana PMID:18485061 TAIR GO
SAHH2
AT3G23810
protein from Arabidopsis thaliana PMID:20442276 TAIR GO
sks5
AT1G76160
protein from Arabidopsis thaliana PMID:20442276 TAIR GO
SKS6
AT1G41830
protein from Arabidopsis thaliana PMID:20442276 TAIR GO
SUC2
AT1G22710
protein from Arabidopsis thaliana PMID:18485061 TAIR GO
PMID:7647685
SUT4
AT1G09960
protein from Arabidopsis thaliana PMID:18485061 TAIR GO
SWEET11
AT3G48740
protein from Arabidopsis thaliana PMID:22157085 TAIR GO
SWEET12
AT5G23660
protein from Arabidopsis thaliana PMID:22157085 TAIR GO
TGG1
AT5G26000
protein from Arabidopsis thaliana PMID:16640593 TAIR GO
TGG2
AT5G25980
protein from Arabidopsis thaliana PMID:16640593 TAIR GO
TMO6
AT5G60200
protein from Arabidopsis thaliana PMID:16581911 TAIR GO
TPX1
AT1G65980
protein from Arabidopsis thaliana PMID:18485061 TAIR GO
TSF
AT4G20370
protein from Arabidopsis thaliana PMID:15951566 TAIR GO
UBC30
AT5G56150
protein from Arabidopsis thaliana PMID:18485061 TAIR GO
UGP1
AT3G03250
protein from Arabidopsis thaliana PMID:20442276 TAIR GO
UGP2
AT5G17310
protein from Arabidopsis thaliana PMID:20442276 TAIR GO
VOZ1
AT1G28520
protein from Arabidopsis thaliana PMID:15295067 TAIR GO
WNK8
AT5G41990
protein from Arabidopsis thaliana PMID:18485061 TAIR GO
WRKY18
AT4G31800
protein from Arabidopsis thaliana PMID:18485061 TAIR GO
WRKY27
AT5G52830
protein from Arabidopsis thaliana PMID:18702671 TAIR GO

companion cell ; PO:0000071

A parenchyma cell (PO:0000074) that is adjacent to a sieve tube element (PO:0000289) and arises from the same phloem mother cell (PO:0000400) as the sieve tube element.

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
ADG1
AT5G48300
protein from Arabidopsis thaliana PMID:15598655 TAIR GO
APL1
AT5G19220
protein from Arabidopsis thaliana PMID:15598655 TAIR GO
APL2
AT1G27680
protein from Arabidopsis thaliana PMID:15598655 TAIR GO
APL3
AT4G39210
protein from Arabidopsis thaliana PMID:15598655 TAIR GO
APS2
AT1G05610
protein from Arabidopsis thaliana PMID:15598655 TAIR GO
AT2G28810.1
AT2G28810
protein from Arabidopsis thaliana PMID:16581911 TAIR GO
FT
AT1G65480
protein from Arabidopsis thaliana PMID:17540570 TAIR GO
FTIP1
AT5G06850
protein from Arabidopsis thaliana PMID:22529749 TAIR GO
GDH1
AT5G18170
protein from Arabidopsis thaliana PMID:16418233 TAIR GO
GDH2
AT5G07440
protein from Arabidopsis thaliana PMID:16418233 TAIR GO
HA3
AT5G57350
protein from Arabidopsis thaliana PMID:8718619 TAIR GO
MADS22 gene from Oryza sativa PMID:16926158 Gramene
(via Gramene Genes)
NAKR1
AT5G02600
protein from Arabidopsis thaliana PMID:21193571 TAIR GO
NPF2.9
AT1G18880
protein from Arabidopsis thaliana PMID:21571952 TAIR GO
ORC2
Origin recognition complex subunit 2
gene from Oryza sativa PMID:14617093 Gramene
(via Gramene Genes)
PNH1
PINHEAD 1
gene from Oryza sativa PMID:14617093 Gramene
(via Gramene Genes)
RCN1
Putative phosphatidylethanolamine-binding protein
gene from Oryza sativa PMID:15255870 Gramene
(via Gramene Genes)
RCN2
Putative phosphatidylethanolamine-binding protein
gene from Oryza sativa PMID:18034312 Gramene
(via Gramene Genes)

protophloem ; PO:0006077

A portion of primary phloem (PO:0006075) tissue has as parts the first-formed sieve elements (PO:0025406) at a particular location and does not have companion cells (PO:0000071, in angiosperms) or albuminous cells (PO:0025412, in gymnosperms) associated with the sieve elements.

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
APL
AT1G79430
protein from Arabidopsis thaliana PMID:14614507 TAIR GO
AUX1
AT2G38120
protein from Arabidopsis thaliana PMID:11641271 TAIR GO
PMID:16690816
GATA20
AT2G18380
protein from Arabidopsis thaliana PMID:16581911 TAIR GO
NAC083
AT5G13180
protein from Arabidopsis thaliana PMID:20388856 TAIR GO

phloem mother cell ; PO:0000400

A cambial initial cell (PO:0000295) which is destined to differentiate into secondary phloem.

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
DOF2.4
AT2G37590
protein from Arabidopsis thaliana PMID:16581911 TAIR GO

sieve tube element ; PO:0000289

A sieve element (PO:0025406) that is part of a sieve tube (PO:0025416) and has as parts sieve areas aggregated into sieve plates (GO:0097218).

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
RTM1
AT1G05760
protein from Arabidopsis thaliana PMID:11743111 TAIR GO
RTM2
AT5G04890
protein from Arabidopsis thaliana PMID:11743111 TAIR GO
SEOa
AT3G01670
protein from Arabidopsis thaliana PMID:20932300 TAIR GO
SEOR1
AT3G01680
protein from Arabidopsis thaliana PMID:20932300 TAIR GO
SUT2
AT2G02860
protein from Arabidopsis thaliana PMID:14739351 TAIR GO
sut4
sucrose transporter 4
gene from Solanum lycopersicum PMID:10948254 SGN
(via SGN Genes)
GO

secondary xylem ; PO:0005848

A portion of xylem (PO:0005352) tissue that develops from a vascular cambium (PO:0005598).

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
AtMYB103
AT1G63910
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
GATL10
AT3G28340
protein from Arabidopsis thaliana PMID:21300919 TAIR GO
GATL2
AT3G50760
protein from Arabidopsis thaliana PMID:21300919 TAIR GO
GATL5
AT1G02720
protein from Arabidopsis thaliana PMID:21300919 TAIR GO
GATL6
AT4G02130
protein from Arabidopsis thaliana PMID:21300919 TAIR GO
GAUT12
AT5G54690
protein from Arabidopsis thaliana PMID:17322407 TAIR GO
IRX9
AT2G37090
protein from Arabidopsis thaliana PMID:17322407 TAIR GO
KNAT7
AT1G62990
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
LGT9
AT1G24170
protein from Arabidopsis thaliana PMID:21300919 TAIR GO
MYB52
AT1G17950
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
MYB54
AT1G73410
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
MYB69
AT4G33450
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
MYB85
AT4G22680
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
NAC010
AT1G28470
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
NAC012
AT1G32770
protein from Arabidopsis thaliana PMID:17237351 TAIR GO
NAC073
AT4G28500
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
NST1
AT2G46770
protein from Arabidopsis thaliana PMID:17237351 TAIR GO
PARVUS
AT1G19300
protein from Arabidopsis thaliana PMID:17991630 TAIR GO
PMID:21300919
PgMYB2
R2R3-MYB transcription factor MYB2
gene from Picea glauca PMID:17397551 POC:Ramona Walls
(via NCBI gi)

cell differentiation stage of secondary xylem ; PO:0025469

A secondary xylem development stage (PO:0025427) that occurs during the interval between the end of a cell division stage of secondary xylem (PO:0025463) and the death of the last living cell in the secondary xylem.

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
PgMYB2
R2R3-MYB transcription factor MYB2
gene from Picea glauca PMID:17397551 POC:Ramona Walls
(via NCBI gi)

vascular bundle ; PO:0005020

A portion of vascular tissue (PO:0009015) that is a unit strand of the vascular system (PO:0000034) and has as part xylem (PO:0005352) or phloem (PO:0005417).

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
AAC1
AT3G08580
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
AAC2
AT5G13490
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
ABCB11
AT1G02520
protein from Arabidopsis thaliana PMID:21239383 TAIR GO
ABCB14
AT1G28010
protein from Arabidopsis thaliana PMID:21239383 TAIR GO
ABCB15
AT3G28345
protein from Arabidopsis thaliana PMID:21239383 TAIR GO
ABCG33
AT2G37280
protein from Arabidopsis thaliana PMID:21239383 TAIR GO
ACBP3
AT4G24230
protein from Arabidopsis thaliana PMID:22345636 TAIR GO
ACT1
AT2G37620
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
ADK1
AT3G09820
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
PMID:17272833
ADK2
AT5G03300
protein from Arabidopsis thaliana PMID:17272833 TAIR GO
AT1G07920.1
AT1G07920
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
AT1G33270.1
AT1G33270
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
AT1G72730.1
AT1G72730
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
AT2G42170.1
AT2G42170
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
AT3G04840.1
AT3G04840
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
AT4G21650.1
AT4G21650
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
AT5G08670.1
AT5G08670
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
ATCAD4
AT3G19450
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
ATMS1
AT5G17920
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
ATP5
AT5G13450
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
bHLH1
Medtr3g099620
gene from Medicago truncatula PMID:25774204 POC:Ethan Johnson
(via LIS)
BIP1
AT5G28540
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
  • na
bm1
GRMZM5G844562
gene from Zea mays PMID:21423772 POC:Ethan Johnson
(via MaizeGDB)
  • na
bm3
AC196475.3_FG004
gene from Zea mays PMID:21423772 POC:Ethan Johnson
(via MaizeGDB)
BUD2
At5g18930
gene from Arabidopsis thaliana PMID:25774204 POC:Ethan Johnson
(via TAIR)
c-NAD-MDH1
AT1G04410
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
CAT3
AT1G20620
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
CIB1
AT4G34530
protein from Arabidopsis thaliana PMID:18988809 TAIR GO
CLO4
AT1G70670
protein from Arabidopsis thaliana PMID:21471120 TAIR GO
CRY2
AT1G04400
protein from Arabidopsis thaliana PMID:17259260 TAIR GO
CSD1
AT1G08830
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
CSD2
AT2G28190
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
CYCA2;4
AT1G80370
protein from Arabidopsis thaliana PMID:21772250 TAIR GO
DMAS1
Zinc-regulated transporter 1
gene from Oryza sativa PMID:15255870 Gramene
(via Gramene Genes)
PMID:14617093
DRT112
AT1G20340
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
EDA9
AT4G34200
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
ER-ANT1
AT5G17400
protein from Arabidopsis thaliana PMID:18296626 TAIR GO
EXO70G2
AT1G51640
protein from Arabidopsis thaliana PMID:20943851 TAIR GO
FBA4
AT5G03690
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
GAD2
AT1G65960
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
GAPC1
AT3G04120
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
GAPC2
AT1G13440
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
GSTF9
AT2G30860
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
HMA2
AT4G30110
protein from Arabidopsis thaliana PMID:15100400 TAIR GO
HMA4
AT2G19110
protein from Arabidopsis thaliana PMID:15100400 TAIR GO
HOG1
AT4G13940
protein from Arabidopsis thaliana PMID:17272833 TAIR GO
IRX12
AT2G38080
protein from Arabidopsis thaliana PMID:21447792 TAIR GO
LOS1
AT1G56070
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
LSI1
Low silicon rice 1
gene from Oryza sativa PMID:14617093 Gramene
(via Gramene Genes)
LSI2
Low silicon rice 2
gene from Oryza sativa PMID:16926158 Gramene
(via Gramene Genes)
MLO11
AT5G53760
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
mMDH1
AT1G53240
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
MS2
AT3G03780
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
MUM4
AT1G53500
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
NDT2
AT1G25380
protein from Arabidopsis thaliana PMID:19745225 TAIR GO
NF-YB10
AT3G53340
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
NIP6;1
AT1G80760
protein from Arabidopsis thaliana PMID:18952773 TAIR GO
NOXY2
AT5G11630
protein from Arabidopsis thaliana PMID:23370715 TAIR GO
PCAP1
AT4G20260
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
PGK1
AT3G12780
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
PNH1
PINHEAD 1
gene from Oryza sativa PMID:12000455 POC:Laurel Cooper
(via Gramene Genes)
Prx37
AT4G08770
protein from Arabidopsis thaliana PMID:21044085 TAIR GO
PSBP-1
AT1G06680
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
QQS
AT3G30720
protein from Arabidopsis thaliana PMID:19154206 TAIR GO
RBCS1A
AT1G67090
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
RBCS1B
AT5G38430
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
RBCS3B
AT5G38410
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
SAHH2
AT3G23810
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
PMID:17272833
SAM-2
AT4G01850
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
SAM1
AT1G02500
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
SAMDC
At3g02470
gene from Arabidopsis thaliana PMID:25774204 POC:Ethan Johnson
(via TAIR)
SHM4
AT4G13930
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
TCP-1
AT3G20050
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
TGG2
AT5G25980
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
TUA4
AT1G04820
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
TUA5
AT5G19780
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
TUB1
AT1G75780
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
UBQ13
AT1G65350
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
VHA-A
AT1G78900
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
YSL2
yellow stripe 1-like
gene from Oryza sativa PMID:17609219 Gramene
(via Gramene Genes)
ZIP4
NA synthase gene 1
gene from Oryza sativa PMID:16263903 Gramene
(via Gramene Genes)

leaf lamina vein ; PO:0020138

A phyllome lamina vein (PO:0025348) that is part of a leaf lamina vascular system (PO:0000048).

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
ACS4
AT2G22810
protein from Arabidopsis thaliana PMID:15699063 TAIR GO
AKN2
AT4G39940
protein from Arabidopsis thaliana PMID:19304933 TAIR GO
APK
AT2G14750
protein from Arabidopsis thaliana PMID:19304933 TAIR GO
APK3
AT3G03900
protein from Arabidopsis thaliana PMID:19304933 TAIR GO
APK4
AT5G67520
protein from Arabidopsis thaliana PMID:19304933 TAIR GO
AT3G15356.1
AT3G15356
protein from Arabidopsis thaliana PMID:19214436 TAIR GO
  • na
bm1
GRMZM5G844562
gene from Zea mays PMID:21423772 POC:Ethan Johnson
(via MaizeGDB)
  • na
bm3
AC196475.3_FG004
gene from Zea mays PMID:21423772 POC:Ethan Johnson
(via MaizeGDB)
chln
Solyc01g100490
gene from Solanum lycopersicum PMID:25774204 POC:Ethan Johnson
(via SGN Genes)
CPR1
AT4G12560
protein from Arabidopsis thaliana PMID:19682297 TAIR GO
CUL1
AT4G02570
protein from Arabidopsis thaliana PMID:23319550 TAIR GO
GLU1
AT5G04140
protein from Arabidopsis thaliana PMID:16407450 TAIR GO
KCO1
AT5G55630
protein from Arabidopsis thaliana PMID:12148538 TAIR GO
N129
Reticulata: Glabra
germplasm from Arabidopsis thaliana NASC:N129 NASC
N3308 germplasm from Arabidopsis thaliana NASC:N3308 NASC
N349
rosfolmut (F71)
germplasm from Arabidopsis thaliana NASC:N349 NASC
N546
flacovcost (V76)
germplasm from Arabidopsis thaliana NASC:N546 NASC
N606
grivicht (V156)
germplasm from Arabidopsis thaliana NASC:N606 NASC
N692
varmargch (V276)
germplasm from Arabidopsis thaliana NASC:N692 NASC
NRP1
AT2G03440
protein from Arabidopsis thaliana PMID:20016941 TAIR GO
NTHK1
ethylene receptor homolog
gene from Nicotiana PMID:12154144 SGN
(via SGN Genes)
PHT4;5
AT5G20380
protein from Arabidopsis thaliana PMID:19513231 TAIR GO
PTB1
AT3G01150
protein from Arabidopsis thaliana PMID:19122186 TAIR GO
PTB2
AT5G53180
protein from Arabidopsis thaliana PMID:19122186 TAIR GO
RSH1
AT4G02260
protein from Arabidopsis thaliana PMID:18535838 TAIR GO
RSH3
AT1G54130
protein from Arabidopsis thaliana PMID:18535838 TAIR GO
SOFL1
AT1G26210
protein from Arabidopsis thaliana PMID:20011053 TAIR GO
SOFL2
AT1G68870
protein from Arabidopsis thaliana PMID:20011053 TAIR GO
SPX1
AT5G20150
protein from Arabidopsis thaliana PMID:18315545 TAIR GO
SPX3
AT2G45130
protein from Arabidopsis thaliana PMID:18315545 TAIR GO
SUS1
AT5G20830
protein from Arabidopsis thaliana PMID:8220487 TAIR GO
sut4
sucrose transporter 4
gene from Solanum lycopersicum PMID:10948254 SGN
(via SGN Genes)
GO
TRN1
AT5G55540
protein from Arabidopsis thaliana PMID:16531491 TAIR GO
TRN2
AT5G46700
protein from Arabidopsis thaliana PMID:16531491 TAIR GO
YSL1
AT4G24120
protein from Arabidopsis thaliana PMID:16297069 TAIR GO

primary leaf vein ; PO:0025413

A leaf lamina vein (PO:0020138) that connects directly to a petiole vascular system (PO:0000052) or a shoot axis vascular system (PO:0000039).

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
NPF1.2
AT1G52190
protein from Arabidopsis thaliana PMID:24006285 TAIR GO
NRT1.12
AT3G16180
protein from Arabidopsis thaliana PMID:24006285 TAIR GO

leaf midvein ; PO:0020139

A primary leaf vein (PO:0025413) that is the central vein of a vascular leaf (PO:0009025).

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
117B
117B bm2 gt1 ^Hi27
stock from Zea mays MaizeGDB:892690 MGCSC
(via MaizeGDB stock)
119F
119F bm2
stock from Zea mays MaizeGDB:892690 MGCSC
(via MaizeGDB stock)
201A
201A mrl1-IHO
stock from Zea mays MaizeGDB:892690 MGCSC
(via MaizeGDB stock)
209C
209C bm6-86-87-8875-6
stock from Zea mays MaizeGDB:892690 MGCSC
(via MaizeGDB stock)
415E
415E bm3-2001PR-1
stock from Zea mays MaizeGDB:892690 MGCSC
(via MaizeGDB stock)
419E
419E gl7 v17 bm3
stock from Zea mays MaizeGDB:892690 MGCSC
(via MaizeGDB stock)
4305E
4305E Pm*-N2443
stock from Zea mays MaizeGDB:892690 MGCSC
(via MaizeGDB stock)
504I
504I bm5-PI251930
stock from Zea mays MaizeGDB:892690 MGCSC
(via MaizeGDB stock)
504J
504J bm5-PI262480
stock from Zea mays MaizeGDB:892690 MGCSC
(via MaizeGDB stock)
511J
511J bm1-PI251009
stock from Zea mays MaizeGDB:892690 MGCSC
(via MaizeGDB stock)
511K
511K bm1-N2331B
stock from Zea mays MaizeGDB:892690 MGCSC
(via MaizeGDB stock)
5803C
5803C bm*-PI228174
stock from Zea mays MaizeGDB:892690 MGCSC
(via MaizeGDB stock)
5803E
5803E bm*-PI251893
stock from Zea mays MaizeGDB:892690 MGCSC
(via MaizeGDB stock)
5803I
5803I bm7-PI267186
stock from Zea mays MaizeGDB:892690 MGCSC
(via MaizeGDB stock)
AT1G11370.1
AT1G11370
protein from Arabidopsis thaliana PMID:20687964 TAIR GO
AT1G77655.1
AT1G77655
protein from Arabidopsis thaliana PMID:20687964 TAIR GO
AT2G03130.1
AT2G03130
protein from Arabidopsis thaliana PMID:20687964 TAIR GO
AT2G17940.1
AT2G17940
protein from Arabidopsis thaliana PMID:20687964 TAIR GO
AT2G42480.1
AT2G42480
protein from Arabidopsis thaliana PMID:20687964 TAIR GO
AT4G30830.1
AT4G30830
protein from Arabidopsis thaliana PMID:20687964 TAIR GO
AT5G11080.2
AT5G11080
protein from Arabidopsis thaliana PMID:20687964 TAIR GO
bf1
blue fluorescent1
gene from Zea mays
  • IMP
    • With from MaizeGDB:def(Bf1..bm4)044-4
MaizeGDB:13541 MaizeGDB
bl
Solyc11g069030
gene from Solanum lycopersicum PMID:25774204 POC:Ethan Johnson
(via SGN Genes)
  • na
bm1
GRMZM5G844562
gene from Zea mays
  • IMP
    • With from MaizeGDB:bm1-N2331B
MaizeGDB:59052 POC:Ethan Johnson
(via MaizeGDB)
  • IMP
    • With from MaizeGDB:bm1
MaizeGDB:59052
  • IMP
    • With from MaizeGDB:bm1-mu1972
MaizeGDB:59052
  • IMP
    • With from MaizeGDB:bm1-PI251009
MaizeGDB:59052
  • IMP
    • With from MaizeGDB:bm1-mu1971
MaizeGDB:59052
PMID:21423772
bm2
brown midrib2
gene from Zea mays
  • IMP
    • With from MaizeGDB:bm2
MaizeGDB:13196 MaizeGDB
  • na
bm3
AC196475.3_FG004
gene from Zea mays
  • IMP
    • With from MaizeGDB:bm3-Burnham
MaizeGDB:13341 POC:Ethan Johnson
(via MaizeGDB)
  • IMP
    • With from MaizeGDB:bm3-1
    • With from MaizeGDB:bm3-2
MaizeGDB:13341
  • IMP
    • With from MaizeGDB:bm3-2001PR-1
MaizeGDB:13341
  • IMP
    • With from MaizeGDB:bm3-91598-3
MaizeGDB:13341
  • IMP
    • With from MaizeGDB:bm3
MaizeGDB:13341
PMID:21423772
bm4
brown midrib4
gene from Zea mays
  • IMP
    • With from MaizeGDB:bm4
MaizeGDB:13193 MaizeGDB
bm5
brown midrib5
gene from Zea mays
  • IMP
    • With from MaizeGDB:bm5-PI251930
MaizeGDB:1187452 MaizeGDB
  • IMP
    • With from MaizeGDB:bm5-PI262480
MaizeGDB:1187452
bm6
brown midrib6
gene from Zea mays
  • IMP
    • With from MaizeGDB:bm6-86-87-8875-6
MaizeGDB:1187452 MaizeGDB
bm7
brown midrib7
gene from Zea mays
  • IMP
    • With from MaizeGDB:bm7-PI267186
MaizeGDB:892690 MaizeGDB
CHAL
AT2G30370
protein from Arabidopsis thaliana PMID:20056678 TAIR GO
DL
DROOPING LEAF
gene from Oryza sativa PMID:14729915 POC:Laurel Cooper
(via Gramene Genes)
e
Solyc04g076850
gene from Solanum lycopersicum PMID:25774204 POC:Ethan Johnson
(via SGN Genes)
GO
EXPA10
AT1G26770
protein from Arabidopsis thaliana PMID:10931949 TAIR GO
FBD1
AT4G13985
protein from Arabidopsis thaliana PMID:20687964 TAIR GO
GA3OX3
AT4G21690
protein from Arabidopsis thaliana PMID:20687964 TAIR GO
Gail's Sweet Plum Tomato germplasm from Solanum lycopersicum SGN ref:861 SGN
(via SGN Germplasm)
GATA23
AT5G26930
protein from Arabidopsis thaliana PMID:20687964 TAIR GO
LeT6
Solyc02g081120
gene from Solanum lycopersicum PMID:25774204 POC:Ethan Johnson
(via SGN Genes)
lxm1
lax midrib1
gene from Zea mays
  • IMP
    • With from MaizeGDB:Lxm1-N1600
MaizeGDB:13422 MaizeGDB
  • IMP
    • With from MaizeGDB:Lxm1
MaizeGDB:13422
  • IMP
    • With from MaizeGDB:Lxm1-N1600
MaizeGDB:13422
  • IMP
    • With from MaizeGDB:Lxm1
MaizeGDB:13422
MKK7
AT1G18350
protein from Arabidopsis thaliana PMID:20687964 TAIR GO
mrl1
midribless1
gene from Zea mays
  • IMP
    • With from MaizeGDB:mrl1-IHO
MaizeGDB:112748 MaizeGDB
  • IMP
    • With from MaizeGDB:mrl1-1
MaizeGDB:112748
NST1
AT2G46770
protein from Arabidopsis thaliana PMID:16214898 TAIR GO
pm1
pale midrib1
gene from Zea mays
  • IMP
    • With from MaizeGDB:pm1
MaizeGDB:13185 MaizeGDB
SHP1
AT3G58780
protein from Arabidopsis thaliana PMID:20687964 TAIR GO
spc1
speckled1
gene from Zea mays
  • IMP
    • With from MaizeGDB:Spc1-N1376
MaizeGDB:58640 MaizeGDB
SPL11
SPOTTED LEAF 11
gene from Oryza sativa PMID:10939258 POC:Laurel Cooper
(via Gramene Genes)
SPX4
AT5G15330
protein from Arabidopsis thaliana PMID:18315545 TAIR GO
SYP72
AT3G45280
protein from Arabidopsis thaliana PMID:20687964 TAIR GO

lateral leaf vein ; PO:0006011

An unbranched second order leaf vein (PO:0020140) that runs between two adjacent primary leaf veins (PO:0025413).

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
LeT6
Solyc02g081120
gene from Solanum lycopersicum PMID:25774204 POC:Ethan Johnson
(via SGN Genes)

xylem ; PO:0005352

A portion of vascular tissue (PO:0009015) that has as part one or more tracheary elements (PO:0000290).

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
AAP6
AT5G49630
protein from Arabidopsis thaliana PMID:12244056 TAIR GO
AT4G27435.1
AT4G27435
protein from Arabidopsis thaliana TAIR:Publication:501729455 TAIR GO
AtMYB103
AT1G63910
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
ATSBT5.2
AT1G20160
protein from Arabidopsis thaliana PMID:15923329 TAIR GO
CESA4
At5g44030
gene from Arabidopsis thaliana PMID:25774204 POC:Ethan Johnson
(via TAIR)
CGT
chlorogenate-dependent caffeoyltransferase
gene from Solanum lycopersicum PMID:20880851 SGN
(via SGN Genes)
CSLA02
AT5G22740
protein from Arabidopsis thaliana TAIR:Publication:501729455 TAIR GO
CTL2
AT3G16920
protein from Arabidopsis thaliana PMID:20056293 TAIR GO
PMID:20056293
DREB19
AT2G38340
protein from Arabidopsis thaliana PMID:21069430 TAIR GO
ELF5A-1
AT1G13950
protein from Arabidopsis thaliana PMID:18304977 TAIR GO
F8H
AT5G22940
protein from Arabidopsis thaliana PMID:19224953 TAIR GO
fer
Solyc06g051550
gene from Solanum lycopersicum PMID:25774204 POC:Ethan Johnson
(via SGN Genes)
FRA8
AT2G28110
protein from Arabidopsis thaliana PMID:16272433 TAIR GO
GATA23
AT5G26930
protein from Arabidopsis thaliana PMID:20888232 TAIR GO
GLDP1
AT4G33010
protein from Arabidopsis thaliana PMID:17496108 TAIR GO
GLDP2
AT2G26080
protein from Arabidopsis thaliana PMID:17496108 TAIR GO
GUT1
AT5G61840
protein from Arabidopsis thaliana PMID:18980662 TAIR GO
GUT2
AT1G27440
protein from Arabidopsis thaliana TAIR:Publication:501729455 TAIR GO
PMID:18980662
HB-8
AT4G32880
protein from Arabidopsis thaliana PMID:16581911 TAIR GO
HKT1
AT4G10310
protein from Arabidopsis thaliana PMID:16359386 TAIR GO
IRX1
At4g18780
gene from Arabidopsis thaliana PMID:25774204 POC:Ethan Johnson
(via TAIR)
IRX10
At1g27440
gene from Arabidopsis thaliana PMID:25774204 POC:Ethan Johnson
(via TAIR)
IRX14
At4g36890
gene from Arabidopsis thaliana PMID:25774204 POC:Ethan Johnson
(via TAIR)
IRX3
At5g17420
gene from Arabidopsis thaliana PMID:25774204 POC:Ethan Johnson
(via TAIR)
IRX4
At1g15950
gene from Arabidopsis thaliana PMID:25774204 POC:Ethan Johnson
(via TAIR)
IRX9
At2g37090
gene from Arabidopsis thaliana PMID:25774204 POC:Ethan Johnson
(via TAIR)
KNAT7
At1g62990
gene from Arabidopsis thaliana PMID:25774204 POC:Ethan Johnson
(via TAIR)
KNAT7
AT1G62990
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
KT2/3
AT4G22200
protein from Arabidopsis thaliana PMID:10929122 TAIR GO
LEW3
At2g40190
gene from Arabidopsis thaliana PMID:25774204 POC:Ethan Johnson
(via TAIR)
MHX
AT2G47600
protein from Arabidopsis thaliana PMID:10406802 TAIR GO
MYB20
AT1G66230
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
MYB42
AT4G12350
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
MYB43
AT5G16600
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
MYB52
AT1G17950
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
MYB54
AT1G73410
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
MYB58
AT1G16490
protein from Arabidopsis thaliana PMID:19122102 TAIR GO
MYB61
AT1G09540
protein from Arabidopsis thaliana PMID:22708996 TAIR GO
MYB63
AT1G79180
protein from Arabidopsis thaliana PMID:19122102 TAIR GO
MYB69
AT4G33450
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
MYB85
AT4G22680
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
N105
gapped xylem (gpx) mutant
germplasm from Arabidopsis thaliana NASC:N105 NASC
N18
IRREGULAR XYLEM1
germplasm from Arabidopsis thaliana NASC:N18 NASC
N19
IRREGULAR XYLEM4
germplasm from Arabidopsis thaliana NASC:N19 NASC
NAC005
AT1G02250
protein from Arabidopsis thaliana PMID:15923329 TAIR GO
NAC010
AT1G28470
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
NAC012
AT1G32770
protein from Arabidopsis thaliana PMID:15923329 TAIR GO
NAC073
AT4G28500
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
NAC076
AT4G36160
protein from Arabidopsis thaliana PMID:16581911 TAIR GO
NPF7.2
AT4G21680
protein from Arabidopsis thaliana PMID:20501909 TAIR GO
PARVUS
AT1G19300
protein from Arabidopsis thaliana PMID:17991630 TAIR GO
PGLP2
AT5G47760
protein from Arabidopsis thaliana PMID:17478634 TAIR GO
PMT1
AT2G16120
protein from Arabidopsis thaliana PMID:19969532 TAIR GO
PMT2
AT2G16130
protein from Arabidopsis thaliana PMID:19969532 TAIR GO
RAC10
AT5G62880
protein from Arabidopsis thaliana PMID:22984069 TAIR GO
ROPGAP3
AT2G46710
protein from Arabidopsis thaliana PMID:22984069 TAIR GO
ROPGEF4
AT2G45890
protein from Arabidopsis thaliana PMID:22984069 TAIR GO
RWA1
AT5G46340
protein from Arabidopsis thaliana PMID:21673009 TAIR GO
RWA2
AT3G06550
protein from Arabidopsis thaliana PMID:21673009 TAIR GO
RWA3
AT2G34410
protein from Arabidopsis thaliana PMID:21673009 TAIR
RWA4
AT1G29890
protein from Arabidopsis thaliana PMID:21673009 TAIR
SWEET17
AT4G15920
protein from Arabidopsis thaliana PMID:23583552 TAIR GO
VND7
AT1G71930
protein from Arabidopsis thaliana PMID:16581911 TAIR GO
WOX4
At1g46480
gene from Arabidopsis thaliana PMID:25774204 POC:Ethan Johnson
(via TAIR)
XND1
AT5G64530
protein from Arabidopsis thaliana PMID:15923329 TAIR GO
ZFWD1
AT4G25440
protein from Arabidopsis thaliana PMID:15923329 TAIR GO

primary xylem ; PO:0005849

A portion of xylem (PO:0005352) tissue that develops from the procambium (PO:0025275).

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
GAUT12
AT5G54690
protein from Arabidopsis thaliana PMID:17322407 TAIR GO
IRX9
AT2G37090
protein from Arabidopsis thaliana PMID:17322407 TAIR GO
LGT9
AT1G24170
protein from Arabidopsis thaliana PMID:21300919 TAIR GO
NAC007
AT1G12260
protein from Arabidopsis thaliana PMID:16103214 TAIR GO

metaxylem ; PO:0000372

A portion of primary xylem (PO:0005849) tissue that has as part one or more metaxylem tracheary elements (PO:0025576) embedded in parenchyma (PO:0005421) tissue and may contain xylem fiber cells (PO:0000274).

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
AT4G28140.1
AT4G28140
protein from Arabidopsis thaliana PMID:16581911 TAIR GO
CLE20
AT1G05065
protein from Arabidopsis thaliana PMID:20884811 TAIR GO
CLE25
AT3G28455
protein from Arabidopsis thaliana PMID:20884811 TAIR GO
CLE26
AT1G69970
protein from Arabidopsis thaliana PMID:20884811 TAIR GO
GATL2
AT3G50760
protein from Arabidopsis thaliana PMID:21300919 TAIR GO
GATL5
AT1G02720
protein from Arabidopsis thaliana PMID:21300919 TAIR GO
MYB46
AT5G12870
protein from Arabidopsis thaliana PMID:16581911 TAIR GO
NAC012
AT1G32770
protein from Arabidopsis thaliana PMID:17114348 TAIR GO
NAC101
AT5G62380
protein from Arabidopsis thaliana PMID:16103214 TAIR GO
PARVUS
AT1G19300
protein from Arabidopsis thaliana PMID:17991630 TAIR GO

protoxylem ; PO:0000272

A portion of primary xylem (PO:0000272) tissue that has as part one or more protoxylem tracheary elements (PO:0025575) embedded in parenchyma (PO:0005421) tissue.

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
AT4G28140.1
AT4G28140
protein from Arabidopsis thaliana PMID:16581911 TAIR GO
AtMYB103
AT1G63910
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
BHLH32
AT3G25710
protein from Arabidopsis thaliana PMID:16581911 TAIR GO
CLE20
AT1G05065
protein from Arabidopsis thaliana PMID:20884811 TAIR GO
FOR1
floral organ regulator 1
gene from Oryza sativa PMID:14617093 Gramene
(via Gramene Genes)
HP6
AT1G80100
protein from Arabidopsis thaliana PMID:16400151 TAIR GO
KNAT7
AT1G62990
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
LGT8
AT1G70090
protein from Arabidopsis thaliana PMID:21300919 TAIR GO
MADS22 gene from Oryza sativa PMID:14617093 Gramene
(via Gramene Genes)
MYB46
AT5G12870
protein from Arabidopsis thaliana PMID:16581911 TAIR GO
MYB52
AT1G17950
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
MYB54
AT1G73410
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
MYB58
AT1G16490
protein from Arabidopsis thaliana PMID:19122102 TAIR GO
MYB63
AT1G79180
protein from Arabidopsis thaliana PMID:19122102 TAIR GO
MYB69
AT4G33450
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
MYB85
AT4G22680
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
NAC010
AT1G28470
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
NAC073
AT4G28500
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
NAC083
AT5G13180
protein from Arabidopsis thaliana PMID:20388856 TAIR GO
PARVUS
AT1G19300
protein from Arabidopsis thaliana PMID:17991630 TAIR GO
VND7
AT1G71930
protein from Arabidopsis thaliana PMID:16103214 TAIR GO
PMID:20388856
YAB1
YABBY1
gene from Oryza sativa PMID:18034312 Gramene
(via Gramene Genes)

tracheary element ; PO:0000290

A native plant cell (PO:0025606) that has a lignified cell wall with secondary thickening and bordered pits.

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
ADK1
AT3G09820
protein from Arabidopsis thaliana PMID:17272833 TAIR GO
ADK2
AT5G03300
protein from Arabidopsis thaliana PMID:17272833 TAIR GO
AT5G51890.1
AT5G51890
protein from Arabidopsis thaliana PMID:16446311 TAIR GO
HOG1
AT4G13940
protein from Arabidopsis thaliana PMID:17272833 TAIR GO
JLO
AT4G00220
protein from Arabidopsis thaliana PMID:19088331 TAIR GO
LBD18
AT2G45420
protein from Arabidopsis thaliana PMID:19088331 TAIR GO
SAHH2
AT3G23810
protein from Arabidopsis thaliana PMID:17272833 TAIR GO
XCP1
AT4G35350
protein from Arabidopsis thaliana PMID:11788755 TAIR GO
PMID:11788755
XCP2
AT1G20850
protein from Arabidopsis thaliana PMID:18573193 TAIR GO

tracheid ; PO:0000301

A tracheary element (PO:0000290) that has no perforations in its cell wall.

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
px1
class III peroxidase encoding gene 1
gene from Picea abies PMID:16897487 POC:Ramona Walls
(via NCBI gi)

xylem vessel member ; PO:0002003

A tracheary element (PO:0000290) that is part of a xylem vessel (PO:0025417) and has as parts perforation plates.

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
TED6
AT1G43790
protein from Arabidopsis thaliana PMID:19383897 TAIR GO
TED7
AT5G48920
protein from Arabidopsis thaliana PMID:19383897 TAIR GO
WAT1
AT1G75500
protein from Arabidopsis thaliana PMID:20497379 TAIR GO

xylem fiber cell ; PO:0000274

A fiber cell (PO:0025407) that is part of a portion of xylem (PO:0005352) tissue.

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
PARVUS
AT1G19300
protein from Arabidopsis thaliana PMID:17991630 TAIR GO
WAT1
AT1G75500
protein from Arabidopsis thaliana PMID:20497379 TAIR GO

xylem vessel ; PO:0025417

A portion of xylem (PO:0005352) tissue that has as parts a tube-like series of vessel members (PO:0002003), the common walls of which have perforations.

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
REF8
At2g40890
gene from Arabidopsis thaliana PMID:25774204 POC:Ethan Johnson
(via TAIR)

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