vascular system

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Annotations to vascular system ; PO:0000034 and its children

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protophloem ; PO:0006077

A portion of primary phloem (PO:0006075) tissue has as parts the first-formed sieve elements (PO:0025406) at a particular location and does not have companion cells (PO:0000071, in angiosperms) or albuminous cells (PO:0025412, in gymnosperms) associated with the sieve elements.

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
GATA20
AT2G18380
protein from Arabidopsis thaliana PMID:16581911 TAIR GO
NAC083
AT5G13180
protein from Arabidopsis thaliana PMID:20388856 TAIR GO

phloem mother cell ; PO:0000400

A cambial initial cell (PO:0000295) which is destined to differentiate into secondary phloem.

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
DOF2.4
AT2G37590
protein from Arabidopsis thaliana PMID:16581911 TAIR GO

sieve tube element ; PO:0000289

A sieve element (PO:0025406) that is part of a sieve tube (PO:0025416) and has as parts sieve areas aggregated into sieve plates (GO:0097218).

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
RTM1
AT1G05760
protein from Arabidopsis thaliana PMID:11743111 TAIR GO
RTM2
AT5G04890
protein from Arabidopsis thaliana PMID:11743111 TAIR GO
SEOa
AT3G01670
protein from Arabidopsis thaliana PMID:20932300 TAIR GO
SEOR1
AT3G01680
protein from Arabidopsis thaliana PMID:20932300 TAIR GO
SUT2
AT2G02860
protein from Arabidopsis thaliana PMID:14739351 TAIR GO
sut4
sucrose transporter 4
gene from Solanum lycopersicum PMID:10948254 SGN
(via SGN Genes)
GO

secondary xylem ; PO:0005848

A portion of xylem (PO:0005352) tissue that develops from a vascular cambium (PO:0005598).

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
AtMYB103
AT1G63910
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
GATL10
AT3G28340
protein from Arabidopsis thaliana PMID:21300919 TAIR GO
GATL2
AT3G50760
protein from Arabidopsis thaliana PMID:21300919 TAIR GO
GATL5
AT1G02720
protein from Arabidopsis thaliana PMID:21300919 TAIR GO
GATL6
AT4G02130
protein from Arabidopsis thaliana PMID:21300919 TAIR GO
GAUT12
AT5G54690
protein from Arabidopsis thaliana PMID:17322407 TAIR GO
IRX9
AT2G37090
protein from Arabidopsis thaliana PMID:17322407 TAIR GO
KNAT7
AT1G62990
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
LGT9
AT1G24170
protein from Arabidopsis thaliana PMID:21300919 TAIR GO
MYB52
AT1G17950
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
MYB54
AT1G73410
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
MYB69
AT4G33450
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
MYB85
AT4G22680
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
NAC010
AT1G28470
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
NAC012
AT1G32770
protein from Arabidopsis thaliana PMID:17237351 TAIR GO
NAC073
AT4G28500
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
NST1
AT2G46770
protein from Arabidopsis thaliana PMID:17237351 TAIR GO
PARVUS
AT1G19300
protein from Arabidopsis thaliana PMID:17991630 TAIR GO
PMID:21300919
PgMYB2
R2R3-MYB transcription factor MYB2
gene from Picea glauca PMID:17397551 POC:Ramona Walls
(via NCBI gi)

cell differentiation stage of secondary xylem ; PO:0025469

A secondary xylem development stage (PO:0025427) that occurs during the interval between the end of a cell division stage of secondary xylem (PO:0025463) and the death of the last living cell in the secondary xylem.

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
PgMYB2
R2R3-MYB transcription factor MYB2
gene from Picea glauca PMID:17397551 POC:Ramona Walls
(via NCBI gi)

vascular bundle ; PO:0005020

A portion of vascular tissue (PO:0009015) that is a unit strand of the vascular system (PO:0000034) and has as part xylem (PO:0005352) or phloem (PO:0005417).

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
AAC1
AT3G08580
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
AAC2
AT5G13490
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
ABCB11
AT1G02520
protein from Arabidopsis thaliana PMID:21239383 TAIR GO
ABCB14
AT1G28010
protein from Arabidopsis thaliana PMID:21239383 TAIR GO
ABCB15
AT3G28345
protein from Arabidopsis thaliana PMID:21239383 TAIR GO
ABCG33
AT2G37280
protein from Arabidopsis thaliana PMID:21239383 TAIR GO
ACBP3
AT4G24230
protein from Arabidopsis thaliana PMID:22345636 TAIR GO
ACT1
AT2G37620
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
ADK1
AT3G09820
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
PMID:17272833
ADK2
AT5G03300
protein from Arabidopsis thaliana PMID:17272833 TAIR GO
AT1G07920.1
AT1G07920
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
AT1G33270.1
AT1G33270
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
AT1G72730.1
AT1G72730
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
AT2G42170.1
AT2G42170
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
AT3G04840.1
AT3G04840
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
AT4G21650.1
AT4G21650
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
AT5G08670.1
AT5G08670
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
ATCAD4
AT3G19450
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
ATMS1
AT5G17920
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
ATP5
AT5G13450
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
bHLH1
Medtr3g099620
gene from Medicago truncatula PMID:25774204 POC:Ethan Johnson
(via LIS)

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