vascular bundle

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Annotations to vascular bundle ; PO:0005020 and its children

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vascular bundle ; PO:0005020

A portion of vascular tissue (PO:0009015) that is a unit strand of the vascular system (PO:0000034) and has as part xylem (PO:0005352) or phloem (PO:0005417).

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
AAC1
AT3G08580
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
AAC2
AT5G13490
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
ABCB11
AT1G02520
protein from Arabidopsis thaliana PMID:21239383 TAIR GO
ABCB14
AT1G28010
protein from Arabidopsis thaliana PMID:21239383 TAIR GO
ABCB15
AT3G28345
protein from Arabidopsis thaliana PMID:21239383 TAIR GO
ABCG33
AT2G37280
protein from Arabidopsis thaliana PMID:21239383 TAIR GO
ACBP3
AT4G24230
protein from Arabidopsis thaliana PMID:22345636 TAIR GO
ACT1
AT2G37620
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
ADK1
AT3G09820
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
PMID:17272833
ADK2
AT5G03300
protein from Arabidopsis thaliana PMID:17272833 TAIR GO
AT1G07920.1
AT1G07920
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
AT1G33270.1
AT1G33270
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
AT1G72730.1
AT1G72730
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
AT2G42170.1
AT2G42170
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
AT3G04840.1
AT3G04840
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
AT4G21650.1
AT4G21650
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
AT5G08670.1
AT5G08670
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
ATCAD4
AT3G19450
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
ATMS1
AT5G17920
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
ATP5
AT5G13450
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
bHLH1
Medtr3g099620
gene from Medicago truncatula PMID:25774204 POC:Ethan Johnson
(via LIS)
BIP1
AT5G28540
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
  • na
bm1
GRMZM5G844562
gene from Zea mays PMID:21423772 POC:Ethan Johnson
(via MaizeGDB)
  • na
bm3
AC196475.3_FG004
gene from Zea mays PMID:21423772 POC:Ethan Johnson
(via MaizeGDB)
BUD2
At5g18930
gene from Arabidopsis thaliana PMID:25774204 POC:Ethan Johnson
(via TAIR)
c-NAD-MDH1
AT1G04410
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
CAT3
AT1G20620
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
CIB1
AT4G34530
protein from Arabidopsis thaliana PMID:18988809 TAIR GO
CLO4
AT1G70670
protein from Arabidopsis thaliana PMID:21471120 TAIR GO
CRY2
AT1G04400
protein from Arabidopsis thaliana PMID:17259260 TAIR GO
CSD1
AT1G08830
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
CSD2
AT2G28190
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
CYCA2;4
AT1G80370
protein from Arabidopsis thaliana PMID:21772250 TAIR GO
DMAS1
Zinc-regulated transporter 1
gene from Oryza sativa PMID:15255870 Gramene
(via Gramene Genes)
PMID:14617093
DRT112
AT1G20340
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
EDA9
AT4G34200
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
ER-ANT1
AT5G17400
protein from Arabidopsis thaliana PMID:18296626 TAIR GO
EXO70G2
AT1G51640
protein from Arabidopsis thaliana PMID:20943851 TAIR GO
FBA4
AT5G03690
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
GAD2
AT1G65960
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
GAPC1
AT3G04120
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
GAPC2
AT1G13440
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
GSTF9
AT2G30860
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
HMA2
AT4G30110
protein from Arabidopsis thaliana PMID:15100400 TAIR GO
HMA4
AT2G19110
protein from Arabidopsis thaliana PMID:15100400 TAIR GO
HOG1
AT4G13940
protein from Arabidopsis thaliana PMID:17272833 TAIR GO
IRX12
AT2G38080
protein from Arabidopsis thaliana PMID:21447792 TAIR GO
LOS1
AT1G56070
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
LSI1
Low silicon rice 1
gene from Oryza sativa PMID:14617093 Gramene
(via Gramene Genes)
LSI2
Low silicon rice 2
gene from Oryza sativa PMID:16926158 Gramene
(via Gramene Genes)
MLO11
AT5G53760
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
mMDH1
AT1G53240
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
MS2
AT3G03780
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
MUM4
AT1G53500
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
NDT2
AT1G25380
protein from Arabidopsis thaliana PMID:19745225 TAIR GO
NF-YB10
AT3G53340
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
NIP6;1
AT1G80760
protein from Arabidopsis thaliana PMID:18952773 TAIR GO
NOXY2
AT5G11630
protein from Arabidopsis thaliana PMID:23370715 TAIR GO
PCAP1
AT4G20260
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
PGK1
AT3G12780
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
PNH1
PINHEAD 1
gene from Oryza sativa PMID:12000455 POC:Laurel Cooper
(via Gramene Genes)
Prx37
AT4G08770
protein from Arabidopsis thaliana PMID:21044085 TAIR GO
PSBP-1
AT1G06680
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
QQS
AT3G30720
protein from Arabidopsis thaliana PMID:19154206 TAIR GO
RBCS1A
AT1G67090
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
RBCS1B
AT5G38430
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
RBCS3B
AT5G38410
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
SAHH2
AT3G23810
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
PMID:17272833
SAM-2
AT4G01850
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
SAM1
AT1G02500
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
SAMDC
At3g02470
gene from Arabidopsis thaliana PMID:25774204 POC:Ethan Johnson
(via TAIR)
SHM4
AT4G13930
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
TCP-1
AT3G20050
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
TGG2
AT5G25980
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
TUA4
AT1G04820
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
TUA5
AT5G19780
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
TUB1
AT1G75780
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
UBQ13
AT1G65350
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
VHA-A
AT1G78900
protein from Arabidopsis thaliana PMID:15971193 TAIR GO
YSL2
yellow stripe 1-like
gene from Oryza sativa PMID:17609219 Gramene
(via Gramene Genes)
ZIP4
NA synthase gene 1
gene from Oryza sativa PMID:16263903 Gramene
(via Gramene Genes)

leaf lamina vein ; PO:0020138

A phyllome lamina vein (PO:0025348) that is part of a leaf lamina vascular system (PO:0000048).

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
ACS4
AT2G22810
protein from Arabidopsis thaliana PMID:15699063 TAIR GO
AKN2
AT4G39940
protein from Arabidopsis thaliana PMID:19304933 TAIR GO
APK
AT2G14750
protein from Arabidopsis thaliana PMID:19304933 TAIR GO
APK3
AT3G03900
protein from Arabidopsis thaliana PMID:19304933 TAIR GO
APK4
AT5G67520
protein from Arabidopsis thaliana PMID:19304933 TAIR GO
AT3G15356.1
AT3G15356
protein from Arabidopsis thaliana PMID:19214436 TAIR GO
  • na
bm1
GRMZM5G844562
gene from Zea mays PMID:21423772 POC:Ethan Johnson
(via MaizeGDB)
  • na
bm3
AC196475.3_FG004
gene from Zea mays PMID:21423772 POC:Ethan Johnson
(via MaizeGDB)
chln
Solyc01g100490
gene from Solanum lycopersicum PMID:25774204 POC:Ethan Johnson
(via SGN Genes)
CPR1
AT4G12560
protein from Arabidopsis thaliana PMID:19682297 TAIR GO
CUL1
AT4G02570
protein from Arabidopsis thaliana PMID:23319550 TAIR GO
GLU1
AT5G04140
protein from Arabidopsis thaliana PMID:16407450 TAIR GO
KCO1
AT5G55630
protein from Arabidopsis thaliana PMID:12148538 TAIR GO
N129
Reticulata: Glabra
germplasm from Arabidopsis thaliana NASC:N129 NASC
N3308 germplasm from Arabidopsis thaliana NASC:N3308 NASC
N349
rosfolmut (F71)
germplasm from Arabidopsis thaliana NASC:N349 NASC
N546
flacovcost (V76)
germplasm from Arabidopsis thaliana NASC:N546 NASC
N606
grivicht (V156)
germplasm from Arabidopsis thaliana NASC:N606 NASC
N692
varmargch (V276)
germplasm from Arabidopsis thaliana NASC:N692 NASC
NRP1
AT2G03440
protein from Arabidopsis thaliana PMID:20016941 TAIR GO
NTHK1
ethylene receptor homolog
gene from Nicotiana PMID:12154144 SGN
(via SGN Genes)
PHT4;5
AT5G20380
protein from Arabidopsis thaliana PMID:19513231 TAIR GO
PTB1
AT3G01150
protein from Arabidopsis thaliana PMID:19122186 TAIR GO
PTB2
AT5G53180
protein from Arabidopsis thaliana PMID:19122186 TAIR GO
RSH1
AT4G02260
protein from Arabidopsis thaliana PMID:18535838 TAIR GO
RSH3
AT1G54130
protein from Arabidopsis thaliana PMID:18535838 TAIR GO
SOFL1
AT1G26210
protein from Arabidopsis thaliana PMID:20011053 TAIR GO
SOFL2
AT1G68870
protein from Arabidopsis thaliana PMID:20011053 TAIR GO
SPX1
AT5G20150
protein from Arabidopsis thaliana PMID:18315545 TAIR GO
SPX3
AT2G45130
protein from Arabidopsis thaliana PMID:18315545 TAIR GO
SUS1
AT5G20830
protein from Arabidopsis thaliana PMID:8220487 TAIR GO
sut4
sucrose transporter 4
gene from Solanum lycopersicum PMID:10948254 SGN
(via SGN Genes)
GO
TRN1
AT5G55540
protein from Arabidopsis thaliana PMID:16531491 TAIR GO
TRN2
AT5G46700
protein from Arabidopsis thaliana PMID:16531491 TAIR GO
YSL1
AT4G24120
protein from Arabidopsis thaliana PMID:16297069 TAIR GO

primary leaf vein ; PO:0025413

A leaf lamina vein (PO:0020138) that connects directly to a petiole vascular system (PO:0000052) or a shoot axis vascular system (PO:0000039).

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
NPF1.2
AT1G52190
protein from Arabidopsis thaliana PMID:24006285 TAIR GO
NRT1.12
AT3G16180
protein from Arabidopsis thaliana PMID:24006285 TAIR GO

leaf midvein ; PO:0020139

A primary leaf vein (PO:0025413) that is the central vein of a vascular leaf (PO:0009025).

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
117B
117B bm2 gt1 ^Hi27
stock from Zea mays MaizeGDB:892690 MGCSC
(via MaizeGDB stock)
119F
119F bm2
stock from Zea mays MaizeGDB:892690 MGCSC
(via MaizeGDB stock)
201A
201A mrl1-IHO
stock from Zea mays MaizeGDB:892690 MGCSC
(via MaizeGDB stock)
209C
209C bm6-86-87-8875-6
stock from Zea mays MaizeGDB:892690 MGCSC
(via MaizeGDB stock)
415E
415E bm3-2001PR-1
stock from Zea mays MaizeGDB:892690 MGCSC
(via MaizeGDB stock)
419E
419E gl7 v17 bm3
stock from Zea mays MaizeGDB:892690 MGCSC
(via MaizeGDB stock)
4305E
4305E Pm*-N2443
stock from Zea mays MaizeGDB:892690 MGCSC
(via MaizeGDB stock)
504I
504I bm5-PI251930
stock from Zea mays MaizeGDB:892690 MGCSC
(via MaizeGDB stock)
504J
504J bm5-PI262480
stock from Zea mays MaizeGDB:892690 MGCSC
(via MaizeGDB stock)
511J
511J bm1-PI251009
stock from Zea mays MaizeGDB:892690 MGCSC
(via MaizeGDB stock)
511K
511K bm1-N2331B
stock from Zea mays MaizeGDB:892690 MGCSC
(via MaizeGDB stock)
5803C
5803C bm*-PI228174
stock from Zea mays MaizeGDB:892690 MGCSC
(via MaizeGDB stock)
5803E
5803E bm*-PI251893
stock from Zea mays MaizeGDB:892690 MGCSC
(via MaizeGDB stock)
5803I
5803I bm7-PI267186
stock from Zea mays MaizeGDB:892690 MGCSC
(via MaizeGDB stock)
AT1G11370.1
AT1G11370
protein from Arabidopsis thaliana PMID:20687964 TAIR GO
AT1G77655.1
AT1G77655
protein from Arabidopsis thaliana PMID:20687964 TAIR GO
AT2G03130.1
AT2G03130
protein from Arabidopsis thaliana PMID:20687964 TAIR GO
AT2G17940.1
AT2G17940
protein from Arabidopsis thaliana PMID:20687964 TAIR GO
AT2G42480.1
AT2G42480
protein from Arabidopsis thaliana PMID:20687964 TAIR GO
AT4G30830.1
AT4G30830
protein from Arabidopsis thaliana PMID:20687964 TAIR GO
AT5G11080.2
AT5G11080
protein from Arabidopsis thaliana PMID:20687964 TAIR GO
bf1
blue fluorescent1
gene from Zea mays
  • IMP
    • With from MaizeGDB:def(Bf1..bm4)044-4
MaizeGDB:13541 MaizeGDB
bl
Solyc11g069030
gene from Solanum lycopersicum PMID:25774204 POC:Ethan Johnson
(via SGN Genes)
  • na
bm1
GRMZM5G844562
gene from Zea mays
  • IMP
    • With from MaizeGDB:bm1-N2331B
MaizeGDB:59052 POC:Ethan Johnson
(via MaizeGDB)
  • IMP
    • With from MaizeGDB:bm1
MaizeGDB:59052
  • IMP
    • With from MaizeGDB:bm1-mu1972
MaizeGDB:59052
  • IMP
    • With from MaizeGDB:bm1-PI251009
MaizeGDB:59052
  • IMP
    • With from MaizeGDB:bm1-mu1971
MaizeGDB:59052
PMID:21423772
bm2
brown midrib2
gene from Zea mays
  • IMP
    • With from MaizeGDB:bm2
MaizeGDB:13196 MaizeGDB
  • na
bm3
AC196475.3_FG004
gene from Zea mays
  • IMP
    • With from MaizeGDB:bm3-Burnham
MaizeGDB:13341 POC:Ethan Johnson
(via MaizeGDB)
  • IMP
    • With from MaizeGDB:bm3-1
    • With from MaizeGDB:bm3-2
MaizeGDB:13341
  • IMP
    • With from MaizeGDB:bm3-2001PR-1
MaizeGDB:13341
  • IMP
    • With from MaizeGDB:bm3-91598-3
MaizeGDB:13341
  • IMP
    • With from MaizeGDB:bm3
MaizeGDB:13341
PMID:21423772
bm4
brown midrib4
gene from Zea mays
  • IMP
    • With from MaizeGDB:bm4
MaizeGDB:13193 MaizeGDB
bm5
brown midrib5
gene from Zea mays
  • IMP
    • With from MaizeGDB:bm5-PI251930
MaizeGDB:1187452 MaizeGDB
  • IMP
    • With from MaizeGDB:bm5-PI262480
MaizeGDB:1187452
bm6
brown midrib6
gene from Zea mays
  • IMP
    • With from MaizeGDB:bm6-86-87-8875-6
MaizeGDB:1187452 MaizeGDB
bm7
brown midrib7
gene from Zea mays
  • IMP
    • With from MaizeGDB:bm7-PI267186
MaizeGDB:892690 MaizeGDB
CHAL
AT2G30370
protein from Arabidopsis thaliana PMID:20056678 TAIR GO
DL
DROOPING LEAF
gene from Oryza sativa PMID:14729915 POC:Laurel Cooper
(via Gramene Genes)
e
Solyc04g076850
gene from Solanum lycopersicum PMID:25774204 POC:Ethan Johnson
(via SGN Genes)
GO
EXPA10
AT1G26770
protein from Arabidopsis thaliana PMID:10931949 TAIR GO
FBD1
AT4G13985
protein from Arabidopsis thaliana PMID:20687964 TAIR GO
GA3OX3
AT4G21690
protein from Arabidopsis thaliana PMID:20687964 TAIR GO
Gail's Sweet Plum Tomato germplasm from Solanum lycopersicum SGN ref:861 SGN
(via SGN Germplasm)
GATA23
AT5G26930
protein from Arabidopsis thaliana PMID:20687964 TAIR GO
LeT6
Solyc02g081120
gene from Solanum lycopersicum PMID:25774204 POC:Ethan Johnson
(via SGN Genes)
lxm1
lax midrib1
gene from Zea mays
  • IMP
    • With from MaizeGDB:Lxm1-N1600
MaizeGDB:13422 MaizeGDB
  • IMP
    • With from MaizeGDB:Lxm1
MaizeGDB:13422
  • IMP
    • With from MaizeGDB:Lxm1-N1600
MaizeGDB:13422
  • IMP
    • With from MaizeGDB:Lxm1
MaizeGDB:13422
MKK7
AT1G18350
protein from Arabidopsis thaliana PMID:20687964 TAIR GO
mrl1
midribless1
gene from Zea mays
  • IMP
    • With from MaizeGDB:mrl1-IHO
MaizeGDB:112748 MaizeGDB
  • IMP
    • With from MaizeGDB:mrl1-1
MaizeGDB:112748
NST1
AT2G46770
protein from Arabidopsis thaliana PMID:16214898 TAIR GO
pm1
pale midrib1
gene from Zea mays
  • IMP
    • With from MaizeGDB:pm1
MaizeGDB:13185 MaizeGDB
SHP1
AT3G58780
protein from Arabidopsis thaliana PMID:20687964 TAIR GO
spc1
speckled1
gene from Zea mays
  • IMP
    • With from MaizeGDB:Spc1-N1376
MaizeGDB:58640 MaizeGDB
SPL11
SPOTTED LEAF 11
gene from Oryza sativa PMID:10939258 POC:Laurel Cooper
(via Gramene Genes)
SPX4
AT5G15330
protein from Arabidopsis thaliana PMID:18315545 TAIR GO
SYP72
AT3G45280
protein from Arabidopsis thaliana PMID:20687964 TAIR GO

lateral leaf vein ; PO:0006011

An unbranched second order leaf vein (PO:0020140) that runs between two adjacent primary leaf veins (PO:0025413).

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
LeT6
Solyc02g081120
gene from Solanum lycopersicum PMID:25774204 POC:Ethan Johnson
(via SGN Genes)

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