xylem

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Annotations to xylem ; PO:0005352 and its children

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protoxylem ; PO:0000272

A portion of primary xylem (PO:0000272) tissue that has as part one or more protoxylem tracheary elements (PO:0025575) embedded in parenchyma (PO:0005421) tissue.

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
AtMYB103
AT1G63910
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
KNAT7
AT1G62990
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
MYB52
AT1G17950
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
MYB54
AT1G73410
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
MYB69
AT4G33450
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
MYB85
AT4G22680
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
NAC010
AT1G28470
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
NAC073
AT4G28500
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
PARVUS
AT1G19300
protein from Arabidopsis thaliana PMID:17991630 TAIR GO
VND7
AT1G71930
protein from Arabidopsis thaliana PMID:16103214 TAIR GO
PMID:20388856
YAB1
YABBY1
gene from Oryza sativa PMID:18034312 Gramene
(via Gramene Genes)

secondary xylem ; PO:0005848

A portion of xylem (PO:0005352) tissue that develops from a vascular cambium (PO:0005598).

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
AtMYB103
AT1G63910
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
GATL10
AT3G28340
protein from Arabidopsis thaliana PMID:21300919 TAIR GO
GATL2
AT3G50760
protein from Arabidopsis thaliana PMID:21300919 TAIR GO
GATL5
AT1G02720
protein from Arabidopsis thaliana PMID:21300919 TAIR GO
GATL6
AT4G02130
protein from Arabidopsis thaliana PMID:21300919 TAIR GO
GAUT12
AT5G54690
protein from Arabidopsis thaliana PMID:17322407 TAIR GO
IRX9
AT2G37090
protein from Arabidopsis thaliana PMID:17322407 TAIR GO
KNAT7
AT1G62990
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
LGT9
AT1G24170
protein from Arabidopsis thaliana PMID:21300919 TAIR GO
MYB52
AT1G17950
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
MYB54
AT1G73410
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
MYB69
AT4G33450
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
MYB85
AT4G22680
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
NAC010
AT1G28470
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
NAC012
AT1G32770
protein from Arabidopsis thaliana PMID:17237351 TAIR GO
NAC073
AT4G28500
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
NST1
AT2G46770
protein from Arabidopsis thaliana PMID:17237351 TAIR GO
PARVUS
AT1G19300
protein from Arabidopsis thaliana PMID:17991630 TAIR GO
PMID:21300919
PgMYB2
R2R3-MYB transcription factor MYB2
gene from Picea glauca PMID:17397551 POC:Ramona Walls
(via NCBI gi)

cell differentiation stage of secondary xylem ; PO:0025469

A secondary xylem development stage (PO:0025427) that occurs during the interval between the end of a cell division stage of secondary xylem (PO:0025463) and the death of the last living cell in the secondary xylem.

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
PgMYB2
R2R3-MYB transcription factor MYB2
gene from Picea glauca PMID:17397551 POC:Ramona Walls
(via NCBI gi)

tracheary element ; PO:0000290

A native plant cell (PO:0025606) that has a lignified cell wall with secondary thickening and bordered pits.

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
ADK1
AT3G09820
protein from Arabidopsis thaliana PMID:17272833 TAIR GO
ADK2
AT5G03300
protein from Arabidopsis thaliana PMID:17272833 TAIR GO
AT5G51890.1
AT5G51890
protein from Arabidopsis thaliana PMID:16446311 TAIR GO
HOG1
AT4G13940
protein from Arabidopsis thaliana PMID:17272833 TAIR GO
JLO
AT4G00220
protein from Arabidopsis thaliana PMID:19088331 TAIR GO
LBD18
AT2G45420
protein from Arabidopsis thaliana PMID:19088331 TAIR GO
SAHH2
AT3G23810
protein from Arabidopsis thaliana PMID:17272833 TAIR GO
XCP1
AT4G35350
protein from Arabidopsis thaliana PMID:11788755 TAIR GO
PMID:11788755
XCP2
AT1G20850
protein from Arabidopsis thaliana PMID:18573193 TAIR GO

tracheid ; PO:0000301

A tracheary element (PO:0000290) that has no perforations in its cell wall.

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
px1
class III peroxidase encoding gene 1
gene from Picea abies PMID:16897487 POC:Ramona Walls
(via NCBI gi)

xylem vessel member ; PO:0002003

A tracheary element (PO:0000290) that is part of a xylem vessel (PO:0025417) and has as parts perforation plates.

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
TED6
AT1G43790
protein from Arabidopsis thaliana PMID:19383897 TAIR GO
TED7
AT5G48920
protein from Arabidopsis thaliana PMID:19383897 TAIR GO
WAT1
AT1G75500
protein from Arabidopsis thaliana PMID:20497379 TAIR GO

xylem fiber cell ; PO:0000274

A fiber cell (PO:0025407) that is part of a portion of xylem (PO:0005352) tissue.

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
PARVUS
AT1G19300
protein from Arabidopsis thaliana PMID:17991630 TAIR GO
WAT1
AT1G75500
protein from Arabidopsis thaliana PMID:20497379 TAIR GO

xylem vessel ; PO:0025417

A portion of xylem (PO:0005352) tissue that has as parts a tube-like series of vessel members (PO:0002003), the common walls of which have perforations.

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
REF8
At2g40890
gene from Arabidopsis thaliana PMID:25774204 POC:Ethan Johnson
(via TAIR)

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