sporophyte development stage

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Annotations to sporophyte development stage ; PO:0028002 and its children

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phloem ; PO:0005417

A portion of vascular tissue (PO:0009015) that has as parts sieve elements (PO:0025406).

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
AT2G28810.1
AT2G28810
protein from Arabidopsis thaliana PMID:16581911 TAIR GO
FTIP1
AT5G06850
protein from Arabidopsis thaliana PMID:22529749 TAIR GO
GATL10
AT3G28340
protein from Arabidopsis thaliana PMID:21300919 TAIR GO
GATL6
AT4G02130
protein from Arabidopsis thaliana PMID:21300919 TAIR GO
LGT9
AT1G24170
protein from Arabidopsis thaliana PMID:21300919 TAIR GO
TSF
AT4G20370
protein from Arabidopsis thaliana PMID:15951566 TAIR GO
UBC30
AT5G56150
protein from Arabidopsis thaliana PMID:18485061 TAIR GO
UGP1
AT3G03250
protein from Arabidopsis thaliana PMID:20442276 TAIR GO
UGP2
AT5G17310
protein from Arabidopsis thaliana PMID:20442276 TAIR GO
VOZ1
AT1G28520
protein from Arabidopsis thaliana PMID:15295067 TAIR GO
WNK8
AT5G41990
protein from Arabidopsis thaliana PMID:18485061 TAIR GO
WRKY18
AT4G31800
protein from Arabidopsis thaliana PMID:18485061 TAIR GO
WRKY27
AT5G52830
protein from Arabidopsis thaliana PMID:18702671 TAIR GO

companion cell ; PO:0000071

A parenchyma cell (PO:0000074) that is adjacent to a sieve tube element (PO:0000289) and arises from the same phloem mother cell (PO:0000400) as the sieve tube element.

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
ADG1
AT5G48300
protein from Arabidopsis thaliana PMID:15598655 TAIR GO
APL1
AT5G19220
protein from Arabidopsis thaliana PMID:15598655 TAIR GO
APL2
AT1G27680
protein from Arabidopsis thaliana PMID:15598655 TAIR GO
APL3
AT4G39210
protein from Arabidopsis thaliana PMID:15598655 TAIR GO
APS2
AT1G05610
protein from Arabidopsis thaliana PMID:15598655 TAIR GO
AT2G28810.1
AT2G28810
protein from Arabidopsis thaliana PMID:16581911 TAIR GO
FT
AT1G65480
protein from Arabidopsis thaliana PMID:17540570 TAIR GO
FTIP1
AT5G06850
protein from Arabidopsis thaliana PMID:22529749 TAIR GO
GDH1
AT5G18170
protein from Arabidopsis thaliana PMID:16418233 TAIR GO
GDH2
AT5G07440
protein from Arabidopsis thaliana PMID:16418233 TAIR GO
HA3
AT5G57350
protein from Arabidopsis thaliana PMID:8718619 TAIR GO
MADS22 gene from Oryza sativa PMID:16926158 Gramene
(via Gramene Genes)
NAKR1
AT5G02600
protein from Arabidopsis thaliana PMID:21193571 TAIR GO
NPF2.9
AT1G18880
protein from Arabidopsis thaliana PMID:21571952 TAIR GO
ORC2
Origin recognition complex subunit 2
gene from Oryza sativa PMID:14617093 Gramene
(via Gramene Genes)
PNH1
PINHEAD 1
gene from Oryza sativa PMID:14617093 Gramene
(via Gramene Genes)
RCN1
Putative phosphatidylethanolamine-binding protein
gene from Oryza sativa PMID:15255870 Gramene
(via Gramene Genes)
RCN2
Putative phosphatidylethanolamine-binding protein
gene from Oryza sativa PMID:18034312 Gramene
(via Gramene Genes)

protophloem ; PO:0006077

A portion of primary phloem (PO:0006075) tissue has as parts the first-formed sieve elements (PO:0025406) at a particular location and does not have companion cells (PO:0000071, in angiosperms) or albuminous cells (PO:0025412, in gymnosperms) associated with the sieve elements.

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
APL
AT1G79430
protein from Arabidopsis thaliana PMID:14614507 TAIR GO
AUX1
AT2G38120
protein from Arabidopsis thaliana PMID:11641271 TAIR GO
PMID:16690816
GATA20
AT2G18380
protein from Arabidopsis thaliana PMID:16581911 TAIR GO
NAC083
AT5G13180
protein from Arabidopsis thaliana PMID:20388856 TAIR GO

phloem mother cell ; PO:0000400

A cambial initial cell (PO:0000295) which is destined to differentiate into secondary phloem.

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
DOF2.4
AT2G37590
protein from Arabidopsis thaliana PMID:16581911 TAIR GO

sieve tube element ; PO:0000289

A sieve element (PO:0025406) that is part of a sieve tube (PO:0025416) and has as parts sieve areas aggregated into sieve plates (GO:0097218).

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
RTM1
AT1G05760
protein from Arabidopsis thaliana PMID:11743111 TAIR GO
RTM2
AT5G04890
protein from Arabidopsis thaliana PMID:11743111 TAIR GO
SEOa
AT3G01670
protein from Arabidopsis thaliana PMID:20932300 TAIR GO
SEOR1
AT3G01680
protein from Arabidopsis thaliana PMID:20932300 TAIR GO
SUT2
AT2G02860
protein from Arabidopsis thaliana PMID:14739351 TAIR GO
sut4
sucrose transporter 4
gene from Solanum lycopersicum PMID:10948254 SGN
(via SGN Genes)
GO

secondary xylem ; PO:0005848

A portion of xylem (PO:0005352) tissue that develops from a vascular cambium (PO:0005598).

Qualifier Name / Symbol Information Evidence Reference Assigned by Associated to
AtMYB103
AT1G63910
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
GATL10
AT3G28340
protein from Arabidopsis thaliana PMID:21300919 TAIR GO
GATL2
AT3G50760
protein from Arabidopsis thaliana PMID:21300919 TAIR GO
GATL5
AT1G02720
protein from Arabidopsis thaliana PMID:21300919 TAIR GO
GATL6
AT4G02130
protein from Arabidopsis thaliana PMID:21300919 TAIR GO
GAUT12
AT5G54690
protein from Arabidopsis thaliana PMID:17322407 TAIR GO
IRX9
AT2G37090
protein from Arabidopsis thaliana PMID:17322407 TAIR GO
KNAT7
AT1G62990
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
LGT9
AT1G24170
protein from Arabidopsis thaliana PMID:21300919 TAIR GO
MYB52
AT1G17950
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
MYB54
AT1G73410
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
MYB69
AT4G33450
protein from Arabidopsis thaliana PMID:18952777 TAIR GO
MYB85
AT4G22680
protein from Arabidopsis thaliana PMID:18952777 TAIR GO

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