Plant Ontology Release #15 May 2011
Plant Ontology Database
Summary of changes to the ontologies
Ontology updates
Number of terms:
Total terms (not including obsoletes) 1426 Total children terms in Plant Anatomy (not including obsoletes) 1185 Total children terms in Plant Growth and Development Stages (not including obsoletes) 239 Associations / Annotations
Number of associations/annotations:
Total number of associations 590701 Number of associations NEW 5993 Total number of unique objects (genes, germplasms, QTLs) 46545 Number of unique objects NEW 117
Number of associations by source database:
Database Associations Total# TAIR Arabidopsis (mouse-ear cress) 531380 NASC Arabidopsis (mouse-ear cress) 1897 Gramene Oryza sativa (rice) 29872 Gramene Phsycomitrella 20 MaizeGDB Zea mays (maize) 7601 SGN (individual species listed below) 19931 -Anisodus acutangulus 2 -Atropa baetica 4 -Capsicum annuum (pepper) 54 -Coffea arabica (coffee) 8 -Datura strumonium (jimson weed) 3 -Hyoscyamus niger (black henbane) 2 -Lycopersicon esculentum (tomato) 18878 -Nicotiana tabacum (tobacco) 38 -Petunia hybrida (hybrid petunia) 56 -Physalis spp 4 -Solanum insanum/Solanum melongena (eggplant) 868 -Solanum tuberosum (potato) 14 Total number of individual object types by source database:
Database Object Type Object Types Total# TAIR (Arabidopsis) gene 24484 NASC (Arabidopsis) germplasm 1897 Gramene (rice) gene 1725 Gramene (rice) QTL 8558 Gramene (Physcomitrella Patens) gene 5 MaizeGDB (maize) gene 1006 MaizeGDB (maize) germplasm 3928 SGN gene 174 SGN germplasm 4503 Total number of associations by evidence code:
Evidence Code Associations Total# IC 18101 IDA 20403 IEA 1 IEP 514468 IMP 32483 ISS 21 NAS 30 TAS 5350 Total number of object types by evidence code:
Object Type Evidence Code Object Type Total# protein IDA 17251 protein IEP 511600 protein IPI 4 protein NAS 29 protein TAS 88 IDA 9 IEP 2248 IMP 4 miRNA IDA 22 miRNA IEP 129 RNA IEP 41 gene_product IEP 1 gene_product NAS 1 snoRNA IEP 1 germplasm IDA 3045 germplasm IMP 23752 gene IC 571 gene IDA 76 gene IEA 1 gene IEP 448 gene IMP 2427 gene ISS 21 gene TAS 5262 QTL IC 17530 QTL IMP 6304