Plant Ontology Release #17 April 2012
Plant Ontology Database
April 2012 Release Page
Ontology updates
Number of terms:
Total terms (not including obsoletes) 1454 Total children terms in Plant Anatomical Entity (not including obsoletes) 1181 Total children terms in Plant Structure Development Stage (not including obsoletes) 271 Associations / Annotations
Number of associations/annotations:
Total number of associations 2175694 Number of associations NEW 5688 Total number of unique objects (genes, germplasms, QTLs) 110950 Number of unique objects NEW 3722
Number of associations by source database:
Database Associations Total# TAIR Arabidopsis (mouse-ear cress) 532113 NASC Arabidopsis (mouse-ear cress) 1897 Gramene Oryza sativa (rice) 29872 Gramene Physcomitrella 20 MaizeGDB Zea mays (maize) 1495156 Jaiswal Lab Fragaria vesca (strawberry) 9561 Cosmoss Physcomitrella 81875 AgBase Gossypium hirsutum (upland cotton) 107 MGCSC 5070 POC Picea (spruce) 3 SGN (individual species listed below) 20020 -Anisodus acutangulus 2 -Atropa baetica 4 -Capsicum annuum (pepper) 54 -Coffea arabica (coffee) 8 -Datura strumonium (jimson weed) 3 -Hyoscyamus niger (black henbane) 2 -Lycopersicon esculentum (tomato) 18951 -Nicotiana tabacum (tobacco) 42 -Petunia hybrida (hybrid petunia) 56 -Physalis spp 4 -Solanum chmielewskii 3 -Solanum insanum/Solanum melongena (eggplant) 873 -Solanum pennellii 3 -Solanum tuberosum (potato) 15 Total number of individual object types by source database:
Database Object Type Object Types Total# TAIR (Arabidopsis) protein 24517 TAIR (Arabidopsis) 230 TAIR (Arabidopsis) miRNA 41 TAIR (Arabidopsis) RNA 2 TAIR (Arabidopsis) gene_product 2 TAIR (Arabidopsis) snoRNA 1 NASC (Arabidopsis) germplasm 1897 Jaiswal Lab (Fragaria) mRNA 3904 Gramene (rice) gene 1715 Gramene (rice) QTL 8558 Gramene (Physcomitrella Patens) gene 5 Cosmoss (Physcomitrella Patens) mRNA 25593 MaizeGDB (maize) gene 780 MaizeGDB (maize) gene_model 35323 SGN gene 216 SGN germplasm 4503 AgBase protein 52 MGCSC stock 3609 POC gene 2 Total number of associations by evidence code:
Evidence Code Associations Total# IC 18101 IDA 20513 IEA 1 IEP 2094675 IGI 1 IMP 37160 ISS 21 NAS 30 TAS 5354 Total number of object types by evidence code:
Object Type Evidence Code Object Type Total# protein IDA 17358 protein IEP 512321 protein IMP 6 protein NAS 29 protein TAS 92 IDA 9 IEP 2254 miRNA IDA 22 miRNA IEP 129 RNA IEP 41 gene_product IEP 1 gene_product NAS 1 snoRNA IEP 1 germplasm IDA 3045 germplasm IMP 18393 gene IC 571 gene IDA 79 gene IEA 1 gene IEP 529 gene IGI 1 gene IMP 7387 gene ISS 21 gene TAS 5262 QTL IC 17530 QTL IMP 6304 mRNA IEP 91436 gene_model IEP 1487963 stock IMP 5070