Plant Ontology Release 16 - October 2011

Release Notes Archive

Plant Ontology Release #16 October 2011

Plant Ontology Database

October 2011 Release Page

Ontology updates

Number of terms:

Total terms (not including obsoletes) 1320
Total children terms in Plant Anatomy (not including obsoletes) 1080
Total children terms in Plant Growth and Development Stages (not including obsoletes) 238

Associations / Annotations

Number of associations/annotations:

Total number of associations 2088062
Number of associations NEW 1497361
Total number of unique objects (genes, germplasms, QTLs) 81624
Number of unique objects NEW 35079

Number of associations by source database:

Database Associations Total#
TAIR Arabidopsis (mouse-ear cress) 531635
NASC Arabidopsis (mouse-ear cress) 1897
Gramene Oryza sativa (rice) 29872
Gramene Phsycomitrella 10
MaizeGDB Zea mays (maize) 1495156
Jaiswal Lab Fragaria vesda (strawberry) 9561
SGN (individual species listed below) 19931
-Anisodus acutangulus 2
-Atropa baetica 4
-Capsicum annuum (pepper) 54
-Coffea arabica (coffee) 8
-Datura strumonium (jimson weed) 3
-Hyoscyamus niger (black henbane) 2
-Lycopersicon esculentum (tomato) 18878
-Nicotiana tabacum (tobacco) 38
-Petunia hybrida (hybrid petunia) 56
-Physalis spp 4
-Solanum insanum/Solanum melongena (eggplant) 868
-Solanum tuberosum (potato) 14

Total number of individual object types by source database:

Database Object Type Object Types Total#
TAIR (Arabidopsis) protein 24490
TAIR (Arabidopsis) miRNA 41
TAIR (Arabidopsis) RNA 2
TAIR (Arabidopsis) gene_product 2
TAIR (Arabidopsis) snoRNA 1
NASC (Arabidopsis) germplasm 1897
Jaiswal Lab (Fragaria) mRNA 3904
Gramene (rice) gene 1715
Gramene (rice) QTL 8558
Gramene (Physcomitrella Patens) gene 5
MaizeGDB (maize) gene 780
MaizeGDB (maize) gene_model 35323
SGN gene 174
SGN germplasm 4503

Total number of associations by evidence code:

Evidence Code Associations Total#
IC 18101
IDA 20464
IEA 1
IEP 2012180
IGI 1
IMP 32076
ISS 21
NAS 30
TAS 5350

Total number of object types by evidence code:

Object Type Evidence Code Object Type Total#
protein IDA 17312
protein IEP 511798
protein NAS 29
protein TAS 88
IDA 9
IEP 2248
miRNA IDA 22
miRNA IEP 129
RNA IEP 41
gene_product IEP 1
gene_product NAS 1
snoRNA IEP 1
germplasm IDA 3045
germplasm IMP 18395
gene IC 571
gene IDA 76
gene IEA 1
gene IEP 438
gene IGI 1
gene IMP 7377
gene ISS 21
gene TAS 5262
QTL IC 17530
QTL IMP 6304
mRNA IEP 9561
gene_model IEP 1487963