Plant Ontology Release 14 - January 2011

Release Notes Archive

Plant Ontology Release #14 January 2011

Plant Ontology Database

Summary of changes to the ontologies

Ontology updates

Number of terms:

Total terms (not including obsoletes) 1282
Total children terms in Plant Structure (not including obsoletes) 1042
Total children terms in Plant Growth and Development Stages (not including obsoletes) 238

Associations / Annotations

Number of associations/annotations:

Total number of associations 584708
Number of associations NEW 0
Total number of unique objects (genes, germplasms, QTLs) 46428
Number of unique objects NEW 0

Number of associations by source database:

Database Associations Total#
TAIR Arabidopsis (mouse-ear cress) 525407
NASC Arabidopsis (mouse-ear cress) 1897
Gramene Oryza sativa (rice) 29872
MaizeGDB Zea mays (maize) 7601
SGN (individual species listed below) 19467
-Anisodus acutangulus 2
-Atropa baetica 4
-Capsicum annuum (pepper) 54
-Coffea arabica (coffee) 8
-Datura strumonium (jimson weed) 3
-Hyoscyamus niger (black henbane) 2
-Lycopersicon esculentum (tomato) 18414
-Nicotiana tabacum (tobacco) 38
-Petunia hybrida (hybrid petunia) 56
-Physalis spp 4
-Solanum insanum/Solanum melongena (eggplant) 868
-Solanum tuberosum (potato) 14

Total number of individual object types by source database:

Database Object Type Object Types Total#
TAIR (Arabidopsis) gene 24381
NASC (Arabidopsis) germplasm 1897
Gramene (rice) gene 1715
Gramene (rice) QTL 8558
MaizeGDB (maize) gene 1006
MaizeGDB (maize) germplasm 3928
SGN gene 174
SGN germplasm 4421

Total number of associations by evidence code:

Evidence Code Associations Total#
IC 18101
IDA 19578
IEA 1
IEP 509300
IMP 32483
ISS 21
NAS 30
TAS 5349

Total number of object types by evidence code:

Object Type Evidence Code Object Type Total#
protein IDA 16434
protein IEP 506482
protein IPI 4
protein NAS 29
protein TAS 87
IDA 466
IEP 2219
IMP 4
miRNA IDA 17
miRNA IEP 129
RNA IEP 40
gene_product IEP 1
gene_product NAS 1
snoRNA IEP 1
germplasm IMP 23748
germplasm IDA 2585
gene IC 571
gene IDA 76
gene IEA 1
gene IEP 428
gene IMP 2427
gene ISS 21
gene TAS 5262
QTL IC 17530
QTL IMP 6304