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Year
]
2011
R. L. Walls
,
“
The Plant Ontology: an updated tool for all plant biologists
”
,
International Botanical Congress (IBC2011)
. Melbourne, Australia, 2011.
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2012
R. L. Walls
,
Athreya, B.
,
Cooper, L.
,
Elser, J.
,
Gandolfo, M. A.
,
Jaiswal, P.
,
Mungall, C. J.
,
Preece, J.
,
Rensing, S.
,
Smith, B.
, and
Stevenson, D. W.
,
“
Ontologies as Integrative Tools for Plant Science
”
,
American Journal of Botany
, vol. 99, no. 8, pp. 1263-75, 2012.
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R. L. Walls
,
“
Mapping of glossary terms from the Flora of North America to the Plant Ontology enhances both resources
”
, in
3rd International Conference on Biomedical Ontology (ICBO 2012)
, Graz, Austria, 2012.
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2010
R. L. Walls
,
“
The Plant Ontology: a tool for structural, developmental, and molecular plant biologists
”
,
Botany 2010
. Providence, RI, 2010.
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2011
R. L. Walls
,
“
Using the Plant Ontology to Link Anatomical Structures to Gene Annotations in
Physcomitrella patens
”
,
Moss 2011
. Black Forest, Germany, 2011.
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R. L. Walls
,
“
Using the Plant Ontology to improve the interoperability of genomic and phenomic data sets
”
,
Plant Genomes & Biotechnology: from Genes to Networks
. Cold Spring Harbor Laboratory, New York, 2011.
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2010
R. L. Walls
,
“
The Plant Ontology: A Common Reference Ontology for Plants
”
,
Bio-Ontologies 2010: Semantic Applications in Life Sciences
. Boston, MA, 2010.
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2012
R. Walls
,
Smith, B.
,
Elser, J.
, and
Goldfain, A.
,
“
A plant disease extension of the Infectious Disease Ontology
”
, in
International Conference on Biomedical Ontology (ICBO-2012)
, Graz, Austria, 2012, vol. 897.
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K. Van Auken
,
Fey, P.
,
Berardini, T. Z.
,
Dodson, R.
,
Cooper, L.
,
Li, D.
,
Chan, J.
,
Li, Y.
,
Basu, S.
,
Muller, H. - M.
,
Chisholm, R.
,
Huala, E.
, and
Sternberg, P. W.
,
“
Text mining in the biocuration workflow: applications for literature curation at WormBase, dictyBase and TAIR
”
,
Database
, vol. 2012, 2012.
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2009
C. - W. Tung
,
“
POC poster presentation
”
,
Plant & Animal Genome Conference XVII
. San Diego, CA, 2009.
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C. - W. Tung
,
“
Plant and Trait Ontology
”
,
GCP Ontology Workshop
. Rome, Italy, 2009.
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C. - W. Tung
,
“
POC poster presentation
”
,
3rd International Biocuration Conference
. Berlin, Germany, 2009.
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2011
V. Shulaev
,
Sargent, D. J.
,
Crowhurst, R. N.
,
Mockler, T. C.
,
Folkerts, O.
,
Delcher, A. L.
,
Jaiswal, P.
,
Mockaitis, K.
,
Liston, A.
,
Mane, S. P.
,
Burns, P.
,
Davis, T. M.
,
Slovin, J. P.
,
Bassil, N.
,
Hellens, R. P.
,
Evans, C.
,
Harkins, T.
,
Kodira, C.
,
Desany, B.
,
Crasta, O. R.
,
Jensen, R. V.
,
Allan, A. C.
,
Michael, T. P.
,
Setubal, J. C.
,
Celton, J. - M.
,
Rees, J. D. G.
,
Williams, K. P.
,
Holt, S. H.
,
Rojas, J. J. R.
,
Chatterjee, M.
,
Liu, B.
,
Silva, H.
,
Meisel, L.
,
Adato, A.
,
Filichkin, S. A.
,
Troggio, M.
,
Viola, R.
,
Ashman, T. - L.
,
Wang, H.
,
Dharmawardhana, P.
,
Elser, J.
,
Raja, R.
,
Priest, H. D.
,
Bryant, D. W.
,
Fox, S. E.
,
Givan, S. A.
,
Wilhelm, L. J.
,
Naithani, S.
,
Christoffels, A.
,
Salama, D. Y.
,
Carter, J.
,
Girona, E. L.
,
Zdepski, A.
,
Wang, W.
,
Kerstetter, R. A.
,
Schwab, W.
,
Korban, S. S.
,
Davik, J.
,
Monfort, A.
,
Denoyes-Rothan, B.
,
Arus, P.
,
Mittler, R.
,
Flinn, B.
,
Aharoni, A.
,
Bennetzen, J. L.
,
Salzberg, S. L.
,
Dickerman, A. W.
,
Velasco, R.
,
Borodovsky, M.
,
Veilleux, R. E.
, and
Folta, K. M.
,
“
The genome of woodland strawberry (
Fragaria vesca
)
”
,
Nat Genet
, vol. 43, pp. 109 - 116, 2011.
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2006
A. Pujar
,
Jaiswal, P.
,
Kellogg, E. A.
,
Ilic, K.
,
Vincent, L.
,
Avraham, S.
,
Stevens, P.
,
Zapata, F.
,
Reiser, L.
,
Rhee, S. Y.
,
Sachs, M. M.
,
Schaeffer, M.
,
Stein, L.
,
Ware, D.
, and
McCouch, S.
,
“
Whole-plant growth stage ontology for angiosperms and its application in plant biology
”
,
Plant Physiology
, vol. 142, no. 2, pp. 414-28, 2006.
PubMed
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2011
J. Preece
,
“
Planteome Annotation Wiki: A Semantic Web Application for the Community Curation of Plant Genotypes and Phenotype.
”
, in
4th International Workshop on Semantic Web Applications and Tools for Life Sciences
, Univ. of London and the Wellcome Trust Collection Conference Center (London, UK), 2011.
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2012
J. Preece
,
“
The Plant Ontology: A Tool for Linking Plant Anatomy and Development to Genomics Across Plant Taxa
”
,
Genome Informatics 2012
. Robinson College, Cambridge, UK, 2012.
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2010
J. Preece
,
“
A Semantic Wiki for Genotype/Phenotype Annotation in Plant Species
”
, in
NETTAB 2010 conference on Biological Wikis
, Naples, Italy, 2010, pp. 109-112.
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2013
J. Preece
,
“
AISO: Annotation of Image Segments using Ontologies
”
,
Plant and Animal Genome XXI Conference
. San Diego, CA, 2013.
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2011
J. Preece
,
“
Planteome Annotation Wiki: A Semantic Application for the Community Curation of Plant Genotypes and Phenotypes
”
, in
SWAT4LS 2011
, London, UK, 2011, pp. 96-97.
DOI
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2013
N. T. V. Lingutla
,
“
Annotation of image segments with ontologies (AISO)
”
, Oregon State University, Corvallis, 2013.
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2012
F. Lens
,
Cooper, L.
,
Gandolfo, M. A.
,
Groover, P.
,
Jaiswal, P.
,
Lachenbruch, R.
,
Spicer, R.
,
Staton, D.
,
Stevenson, D. W.
,
Walls, R. L.
, and
Wegrzyn, J.
,
“
An extension of the Plant Ontology project supporting wood anatomy and development research
”
,
IAWA Journal
, vol. 33, pp. 113-117, 2012.
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2013
P. Jaiswal
,
“
A Resource for a Common Reference Ontology for Plants
”
,
Plant and Animal Genome XXI Meeting
. San Diego, CA, 2013.
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2012
P. Jaiswal
,
“
Annotating the Maize B73 Gene Expression Atlas in the Plant Ontology- A Tool for Plant Genomics.
”
,
54th Annual Maize Genetics Conference
. Portland, OR, 2012.
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2014
P. Jaiswal
,
“
Plant Environmental Condition Ontology (EO)
”
,
Fourth Annual Summit of the Phenotype Ontology Research Coordination Network
. Phenotype Research Coordination Network, Biosphere2, Tucson, AZ, 2014.
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2005
P. Jaiswal
,
Avraham, S.
,
Ilic, K.
,
Kellogg, E. A.
,
McCouch, S.
,
Pujar, A.
,
Reiser, L.
,
Rhee, S. Y.
,
Sachs, M. M.
,
Schaeffer, M.
,
Stein, L.
,
Stevens, P.
,
Vincent, L.
,
Ware, D.
, and
Zapata, F.
,
“
Plant Ontology (PO): a Controlled Vocabulary of Plant Structures and Growth Stages
”
,
Comparative and Functional Genomics
, vol. 6, no. 7-8, pp. 388-97, 2005.
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